Effector proteins of rapamycin

ABSTRACT

This invention comprises antibodies to rapamycin effector proteins, and preparations thereof. Novel Rapamycin-FKBP12 binding proteins, nucleic acids and their fragments are also described, as are related methods and therapeutic uses of the proteins, nucleic acids, and antibodies.

RELATED APPLICATIONS

[0001] This application is a continuation-in-part of co-pending patent application Ser. No. 08/384,524, filed Feb. 13, 1995, which is a continuation-in-part of patent application Ser. No. 08/312,023, filed Sep. 26, 1994, now abandoned, which is a continuation-in-part of patent application Ser. No. 08/207,975, filed Mar. 8, 1994, now abandoned.

[0002] This invention concerns effector proteins of Rapamycin. More particularly, this invention concerns novel Rapamycin-FKBP12 binding proteins of mammalian origin for identification, design and synthesis of immunomodulatory, anti-restenosis or anti-tumor agents.

BACKGROUND OF THE INVENTION

[0003] Rapamycin is a macrolide antibiotic produced by Streptomyces hygroscopicus which was first characterized via its properties as an antifungal agent. It adversely affects the growth of fungi such as Candida albicans and Microsporum gypseum. Rapamycin, its preparation and its antibiotic activity were described in U.S. Pat. No. 3,929,992, issued Dec. 30, 1975 to Surendra Sehgal et al. In 1977 Martel, R. R. et al. reported on immunosuppressive properties of rapamycin against experimental allergic encephalitis and adjuvant arthritis in the Canadian Journal of Physiological Pharmacology, 55, 48-51 (1977). In 1989, Calne, R. Y. et al. in Lancet, 1989, no. 2, p. 227 and Morris, R. E. and Meiser, B. M. in Medicinal Science Research, 1989, No. 17, P. 609-10, separately reported on the effectiveness of rapamycin in inhibiting rejection in vivo in allograft transplantation. Numerous articles have followed describing the immunosuppressive and rejection inhibiting properties of rapamycin, and clinical investigation has begun for the use of rapamycin in inhibiting rejection in transplantation in man.

[0004] Rapamycin alone (U.S. Pat. No. 4,885,171) or in combination with picibanil (U.S. Pat. No. 4,401,653) has been shown to have antitumor activity. R. R. Martel et al. [Can. J. Physiol. Pharmacol. 55, 48 (1977)] disclosed that rapamycin is effective in the experimental allergic encephalomyelitis model, a model for multiple sclerosis; in the adjuvant arthritis model, a model for rheumatoid arthritis; and effectively inhibited the formation of IgE-like antibodies.

[0005] The immunosuppressive effects of rapamycin have been disclosed in FASEB 3, 3411 (1989). Cyclosporin A and FK-506, other macrocyclic molecules, also have been shown to be effective as immunosuppressive agents, therefore useful in preventing transplant rejection [FASEB 3, 3411 (1989); FASEB 3, 5256 (1989); R. Y. Calne et al., Lancet 1183 (1978); and U.S. Pat. No. 5,100,899].

[0006] Rapamycin has also been shown to be useful in preventing or treating systemic lupus erythematosus [U.S. Pat. No. 5,078,999], pulmonary inflammation [U.S. Pat. No. 5,080,899], insulin dependent diabetes mellitus [Fifth Int. Conf. Inflamm. Res. Assoc. 121 (Abstract), (1990)], and smooth muscle cell proliferation and intimal thickening following vascular injury [Morris, R. J. Heart Lung Transplant 11 (pt. 2): 197 (1q92)].

[0007] Mono- and diacylated derivatives of rapamycin (esterified at the 28 and 43 positions) have been shown to be useful as antifungal agents (U.S. Pat. No. 4,316,885) and used to make water soluble prodrugs of rapamycin (U.S. Pat. No. 4,650,803). Recently, the numbering convention for rapamycin has been changed; therefore according to Chemical Abstracts nomenclature, the esters described above would be at the 31- and 42-positions. U.S. Pat. No. 5,118,678 discloses carbamates of rapamycin that are useful as immunosuppressive, anti-inflammatory, antifungal, and antitumor agents. U.S. Pat. No. 5,100,883 discloses fluorinated esters of rapamycin. U.S. Pat. No. 5,118,677 discloses amide esters of rapamycin. U.S. Pat. No. 5,130,307 discloses aminoesters of rapamycin. U.S. Pat. No. 5,117,203 discloses sulfonates and sulfamates of rapamycin. U.S. Pat. No. 5,194,447 discloses sulfonylcarbamates of rapamycin.

[0008] U.S. Pat. No. 5,100,899 (Calne) discloses methods of inhibiting transplant rejection in mammals using rapamycin and derivatives and prodrugs thereof. Other chemotherapeutic agents listed for use with rapamycin are azathioprine, coricosteroids, cyclosporin (and cyclosporin A), and FK-506, or any combination thereof.

[0009] Rapamycin produces immunosuppressive effects by blocking intracellular signal transduction. Rapamycin appears to interfere with a calcium independent signalling cascade in T cells and mast cells [Schreiber et al. (1992) Tetrahedron 48:2545-2558]. Rapamycin has been shown to bind to certain immunophilins which are members of the FK-506 binding proteins (FKBP) family. In particular, Rapamycin has been shown to bind to the binding proteins, FKBP12, FKBP13, FKBP25 [Galat A. et al., (1992) Biochemistry 31(8);2427-2437 and Ferrera A, et al., (1992) Gene 113(1):125-127; Armistead and Harding, Ann. Reports in Med. Chem. 28:207-215, 1993], and FKBP52 [WO 93/07269]

[0010] Rapamycin is able to inhibit mitogen-induced T cell and B cell proliferation as well as proliferation induced by several cytokines, including IL-2, IL-3, IL-4 and IL-6 (reviewed by Sehgal et al., Med. Research Rev.14: 1-22, 1994). It can also inhibit antibody production. Rapamycin has been shown to block the cytokine-induced activation of p70⁵⁶ kinase which appears to correlate with Rapamycin's ability to decrease protein synthesis accompanying cell cycle progression (Calvo et al., Proc. Natl. Acad. Sci. USA, 89:7571-7575,1992; Chung et al., Cell 69:1227-1236, 1992; Kuo et al., Nature 358:70-73,1992; Price et al., Science 257:973-977, 1992). It also inhibits the activation of cdk2/cyclin E complex (Flanagan et al., Ann. N.Y.Acad. Sci, in press; Flanagan et al, Mol. Cell biol., in press; Flanagan et al., J.Cell Biochem. 17A:292, 1993). Rapamycin's effects are not mediated by direct binding to p70⁵⁶ kinase and cdk2/cyclin E, but by action of the Rapamycin-FKBP complex on upstream component(s) which regulate the activation status of the kinases.

[0011] It is generally accepted that the action of immunosuppressive drugs, such as Rapamycin, cyclosporine and FK506, is dependent upon the formation of a complex with their respective intracellular receptor proteins called immunophilins. While the binding of these immunosuppressants with their respective immunophilins inhibits the cis-trans peptidyl prolyl isomerase (PPIase) activity of immunophilins, PPIase inhibition is not sufficient to mediate the immunosuppressive activity (reviewed in Armistead and Harding, Annual Reports in Med. Chem, 28:207-215:1993). Two rapamycin analogs which are Diels Alder adducts, one with 4-phenyl-1,2,4-triazoline-3,5-dione, and the second with 4-methyl-1,2,4-triazoline-3,5-dione, bind to FKBP, inhibited its PPIase activity, yet they did not exhibit any detectable immunosuppressive activity. The phenyl-triazolinedione Diels Alder adduct at high molar excess has been shown to competitively inhibit rapamycin's effect on DNA synthesis in mitogen-stimulated murine thymocyte proliferation (Ocain et al., Biochem. Biophys. Res. Commun. 192:1340, 1993). Recent evidence suggests that the binary immunophilin-drug complex such as cyclophilin-cyclosporin A and FKBP-FK506 gains a new function that enables it to block signal transduction by acting on specific target proteins. The molecular target of both cyclophilin-cyclosporin A and FKBP-FK506 complexes such as has been identified as the Ca⁺²/calmodulin dependent serine/threonine phosphatase calcineurin (J. Liu et al, Cell 66, 807, 1991; J. Liu et al, Biochemistry 31, 3896, 1992; W. M. Flanagan, et al., Nature 352, 803, 1992; McCaffrey et al., J. Biol. Chem. 268, 3747, 1993; McCaffrey et al., Science 262:750, 1993).

[0012] Rapamycin's antifungal and immunosuppressive activities are mediated via a complex consisting of Rapamycin, a member of the FK506 binding protein (FKBP) family and at least one additional third protein, called the target of Rapamycin (TOR). The family of FKBPs is reviewed by Armistead and Harding (Annual Repons in Med. Chem, 28:207-215:1993). The relevant FKBP molecule in Rapamycin's antifungal activity has been shown to be FKBP12 (Heitman et al., Science 253:905-909:1993). In mammalian cells, the relevant FKBPs are being investigated. Although two TOR proteins (TOR1 and TOR2) have been identified in yeast (Kunz et al., Cell 73:585-596:1993), the target of Rapamycin in human cells remains elusive. The carboxy terminus of yeast TOR2 has been shown to exhibit 20% identity with two proteins, the p110 subunit of phosphatidylinositol 3-kinase and VPS34, a yeast vacuolar sorting protein also shown to have PI 3K activity. However, J. Blenis et al. (AAI meeting, May, 1993) have reported that Rapamycin-FKBP12 complex does not directly mediate its effects on PDGF stimulated cells via the p110, p85 PI 3K complex.

DESCRIPTION OF THE INVENTION

[0013] This invention concerns isolated, cloned and expressed proteins which bind to a complex of GST-FKBP12-Rapamycin. These proteins are isolated from membrane preparations of Molt 4 T cell leukemia. The sizes of the four novel proteins are estimated by PAGE migration to be 125±12 kilodaltons (kDa), 148±14 kDa, 208+15 kDa and 210+220 kDa and will be referred to herein and in the claims that follow, as the 125 kDa, 148 kDa, 208 kDa, and 210 kDa, respectively. The four proteins may also be referred to herein as effector proteins.

[0014] The proteins of this invention can be used in screening assays, such as enzyme inhibitor assays and binding assays, to identify endogenous complexes and ligands and novel exogenous compounds (like Rapamycin) which modulate their functions. They can also be used in assays to identify compounds with therapeutic benefit for restenosis, immunomodulation and as antitumor agents. Cloning the proteins of this invention does not only allow the production of large quantities of the proteins, it also provides a basis for the development of related anti-sense therapeutics. The use of cDNA clones to generate anti-sense therapeutics with immunomodulatory activity (for use against transplantation rejection, graft versus host disease, autoimmune diseases such as lupus, myasthenia gravis, multiple sclerosis, rheumatoid arthritis, type I diabetes, and diseases of inflammation such as psoriasis, dermitis, eczema, seborrhea, inflammatory bowel disease, pulmonary inflammation, asthma, and eye uveitis), antirestenosis and anti-tumor activity is included within the scope of this invention.

[0015] The proteins of the present invention can be isolated from mammalian cells, such as cells of the T cell leukemia cell line, Molt 4 (ATCC 1582, American Type Cell Culture, 12301 Parklawn Drive, Rockville, Md., USA, 20852), the B cell lymphoma, BJAB, or normal human T cells. These mammalian cells can be lysed in a buffer containing protease inhibitors and reducing agent (2-ME), such as hypotonic buffer A (100 mM HEPES, pH 7.5, 20 mM KCl, 1 mM EDTA, 0.4 mM PMSF and 2 mM beta mercaptoethanol (2-ME)). The cell nuclei and unbroken cells are cleared by centrifugation at a temperature which minimizes protein degradation. The membrane fraction of the cells can then be concentrated or pelleted by ultracentrifugation at 100,000 g. Detergent solubilization of the membrane pellet is carried out in a detergent containing buffer such as buffer B (50 mM Tris, pH 7.2, 100 mM NaCl, 20 mM KCl, 0.2 mM PMSF, 1 mM 2-ME, 2 mM CaCl₂, 2 mM MgCl₂, 5 μg/ml aprotinin, leupeptin, pepstatin A and antipain), containing CHAPSO (3-[(3-cholamido-propyl)dimethylammonio]-1-propane sulfonate; 12 mM) or Triton X100 (polyethylene glycol 4-isooctylphenyl ether). The solubilized membrane proteins can then be separated from the debris by 100,000 g ultracentifugation at a temperature which minimizes protein degradation. The supernatant containing solubilized membrane proteins is then preabsorbed with an affinity resin, such as glutathione resin, in the presence of protease inhibitors at a temperature which minimizes protein degradation. After centrifuation to remove the resin from the supernatant, the supernatant is then incubated with complexed Rapamycin or Rapamycin analog to FKBP, such as GST-FKBP12—Rapamycin at a temperature which minimizes protein degradation. The mixture of solubilized membrane proteins, incubated with complexed Rapamycin or Rapamycin analog to FKBP, such as GST-FKBP12—Rapamycin, can then be incubated with the affinity resin to bind the complexes of rapamycin or rapamycin analog, FKBP fusion protein and binding proteins at a temperature which minimizes protein degradation. After most non-specific proteins are rinsed away using a detergent containing buffer, such as Buffer C (50 mM Tris, pH 7.2, 100 mM NaCl, 20 mM KCl, 0.2 mM PMSF, 1 mM 2-ME or 10 mM dithiothreitol, 0-5 mM CaCl₂, 0-5 mM MgCl₂, 5 μg/ml aprotinin, leupeptin, pepstatin A and antipain and 0.1% Triton X100) (Polyethylene glycol 4-isooctyl phenyl ether), the proteins are eluted from the resin under denaturing conditions, such as a buffer containing sufficient detergent to dissociate it from resin (e.g. Laehli buffer with or without glycerol or dye, as described by Laemli, Nature 227:680, 1970), or non-denaturing conditions such as a buffer containing an appropriate eluting compound for the affinity column, such as 5 mM glutathione. The proteins can then be separated by size using SDS polyacrylamide gel electrophoresis (SDS-PAGE).

[0016] The present invention also includes the genomic DNA sequences for the abovementioned proteins, as well as the cDNA and anti-sense RNA and DNA sequences which correspond to the genes for the abovementioned proteins. The present invention further includes the proteins of other mammalian species which are homologous or equivalent at least in function to the abovementioned proteins, as well as the DNA gene sequences for the homologous or equivalent proteins and the cDNA and anti-sense RNA and DNA sequences which correspond to the genes for the homologous or equivalent proteins.

[0017] For the purposes of this disclosure and the claims that follow, equivalents of the proteins of this invention are considered to be proteins, protein fragments and/or truncated forms with substantially similar, but not identical, amino acid sequences to the proteins mentioned above, the equivalents exhibiting rapamycin-FKBP complex binding characteristics and function similar to the proteins mentioned above. Therefore, in this specification and the claims below, references to the 125 kDa, 148 kDa, 208 kDa, and 210 kDa proteins of this invention are also to be understood to indicate and encompass homologous or equivalent proteins, as well as fragmented and/or truncated forms with substantially similar, but not identical, amino acid sequences of the 125 kDa, 148 kDa, 208 kDa, and 210 kDa proteins mentioned above.

[0018] These proteins or protein homologues or equivalents can be generated by similar isolation procedures from different cell types and/or by recombinant DNA methods and may be modified by techniques including site directed mutagenesis. For example, the genes of this invention can be engineered to express one or all of the proteins as a fusion protein with the fusion partner giving an advantage in isolation (e.g. HIS oligomer, immunoglobulin Fc, glutathione S-transferase, FLAG etc). Mutations or truncations which result in a soluble form can also be generated by site directed mutagenesis and would give advantages in isolation.

[0019] This invention further includes oligopeptide fragments, truncated forms and protein fragments that retain binding affinity vet have less than the active protein's amino acid sequences. This invention also includes monoclonal and polyclonal antibodies specific for the proteins and their uses. Such uses include methods for screening for novel agents for immunomodulation and/or anti-tumor activity and methods of measuring the parent compound and/or metabolites in biological samples obtained from individuals taking immunosuppressive drugs. The use of the cDNA clone to generate anti-sense therapeutics (Milligan et al, J. Med. Chem. 36:1923-1936, 1993) with immunomodulatory activity (transplantation rejection, graft versus host disease, autoimmune diseases such as lupus, myasthenia gravis, multiple sclerosis, rheumatoid arthritis, type I diabetes, and diseases of inflammation such as psoriasis, dermitis, eczema, seborrhea, inflammatory bowel disease, pulmonary inflammation, asthma, and eye uveitis), and anti-tumor activity is also included in the present invention.

[0020] The proteins of this invention can also be made by recombinant DNA techniques familiar to those skilled in the art. That is, the gene of the protein in question can be cloned by obtaining a partial amino acid sequence by digestion of the protein with a protease, such as Lysine C, and isolating the resulting protein fragments by microbore HPLC, followed by fragment sequencing (Matsudaira in A Practical Guide to Protein and Peptide Purification for Microsequencing, Academic Press (San Diego, Calif., 1989)). The determined sequence can then be used to make oligonucleotide probes which can be used to screen a human cDNA library directly or generate probes by polymerase chain reaction. The library can be generated from human T cells or the cell lines, Molt 4, Jurkat, or other etc. to obtain clones. These clones can be used to identify additional clones containing additional sequences until the protein's full gene, i.e. complete open reading frame, is cloned.

[0021] It is known in the art that some proteins can be encoded by an open reading frame which is longer than initially predicted by the size of the protein. These proteins may represent cleavage products of the precursor protein translated from the complete open reading frame (eg. IL-1 beta) or proteins translated using a downstream start codon (eg. Hepaptitis B surface antigen). In view of this knowledge, it is understood that the term cDNA as used herein and in the claims below refers to cDNA for the gene's complete open reading frame or any portions thereof which may code for a protein of this invention or the protein's fragments, together or separate, or truncated forms, as previously discussed.

[0022] In a complementary strategy, the gene(s) for the proteins of this invention may be identified by interactive yeast cloning techniques using FKBP12:RAPA as a trap for cloning. These strategies can also be combined to quicken the identification of the clones.

[0023] The relevant cDNA clone encoding the gene for any of the four proteins can also be expressed in E. coli, yeast, or baculovirus infected cells or mammalian cells using state of the art expression vectors. Isolation can be performed as above or the cDNA can be made as a fusion protein with the fusion partner giving an advantage in isolation (e.g. HIS oligomer, immunoglobulin Fc, glutathione S-transferase, etc). Mutations which result in a soluble form can also be generated by site directed mutagenesis and would give advantages in isolation.

[0024] The uses of such cDNA clones include production of recombinant proteins. Further, such recombinant proteins, or the corresponding natural proteins isolated from mammalian cells, or fragments thereof (including peptide oligomers) are useful in generation of antibodies to these proteins. Briefly, monoclonal or polyclonal antibodies are induced by immunization with recombinant proteins, or the corresponding natural proteins isolated from mammalian cells, or fragments thereof (including peptide oligomers conjugated to a carrier protein (e.g. keyhole limpet hemocyanin or bovine serum albumin)) of animals using state of the art techniques. The antibodies can be used in the purification process of the natural proteins isolated from mammalian cells or recombinant proteins from E. coli, yeast, or baculovirus infected cells or mammalian cells, or cell products.

[0025] The uses of such cDNA clones include production of recombinant proteins. Further, such recombinant proteins, or the corresponding natural proteins isolated from mammalian cells, are useful in methods of screening for novel agents such as synthetic compounds, natural products, exogenous or endogenous substrates for immunomodulation and/or antitumor activity. The natural products which may be screened may include, but are not limited to, cell lysates, cell supernatants, plant extracts and the natural broths of fungi or bacteria. As an example of a competitive binding assay, one of these proteins attached to a matrix (either covalently or noncovalently) can be incubated with a buffer containing the compounds, natural products, cell lysates or cell supernatants and a labeled rapamycin:FKBP complex. The ability of the compound, natural products, exogenous or endogenous substrates to competitively inhibit the binding of the complex or specific antibody can be assessed. Examples of methods for labeling the complex include radiolabeling, fluorescent or chemiluminescent tags, fusion proteins with FKBP such as luciferase, and conjugation to enzymes such as horse radish peroxidase, alkaline phosphatase, acetylcholine esterase (ACHE), etc. As an example of an enzymatic assay, the proteins are incubated in the presence or absence of novel agents such as synthetic compounds, natural products, exogenous or endogenous substrates with substrate and the enzymatic activity of the protein can be assessed. Methods of measuring the parent compound and/or metabolites in biological samples obtained from individuals taking immunosuppressive drugs can also be assessed using these proteins.

[0026] This invention includes a method for identifying substances which may be useful as immunomodulatory agents or anti-tumor agents, the method utilizing the following steps:

[0027] a) combining the substance to be tested with one of the four mammalian proteins (125 kDa, 148 kDa, 208 kDa or 210 kDa) of this invention, with the protein being bound to a solid support:

[0028] b) maintaining the substance to be tested and the protein bound to the solid support of step (a) under conditions appropriate for binding of the substance to be tested with the protein, and

[0029] c) determining whether binding of the substance to be tested occurred in step (b).

[0030] This invention also includes a method for identifying substances which may be useful as immunomodulatory or antitumor agents which involves the following steps:

[0031] a) combining a substance to be tested with one of the mammalian proteins of this invention, the protein being bound to a solid support:

[0032] b) maintaining the substance to be tested and the protein bound to the solid support of step (a) under conditions appropriate for binding of the substance to be tested with the protein, and

[0033] c) determining whether the presence of the substance to be tested modulated the activity of the mammalian protein.

[0034] This invention further includes a method for detecting, in a biological sample, rapamycin, rapamycin analogs or rapamycin metabolites which, when complexed with a FKBP, bind to one of the four listed proteins of this invention, the method comprising the steps of:

[0035] a) combining the biological sample with a FKBP to form a first mixture containing, if rapamycin, rapamycin analogs or rapamycin metabolites are present in the biological sample, a rapamycin:FKBP complexes, rapamycin analog:FKBP complexes, or rapamycin metabolite:FKBP complexes;

[0036] b) creating a second mixture by adding the first mixture to one of the proteins of this invention, the protein bound to a solid support;

[0037] c) maintaining the second mixture of step (b) under conditions appropriate for binding the rapamycin:FKBP complexes, rapamycin analog:FKBP complexes, or rapamycin metabolite:FKBP complexes, if present, to the protein of this invention; and

[0038] d) determining whether binding of the rapamycin:FKBP complexes, rapamycin analog:FKBP complexes, or rapamycin metabolite:FKBP complexes and the protein occurred in step (c).

[0039] Also included in this invention is the use of the cDNA clones to generate anti-sense therapeutics. This can be accomplished by using state of the art techniques, such as those described in Milliean et al, J. Med. Chem. 36:14:1924-1936. For the purposes of this disclosure and the claims that follow, antisense RNA and DNA are understood to include those RNA and DNA strands derived from a cDNA clone which encodes for one of the four proteins (125 kDa, 148 kDa, 208 kDa or 210 kDa) of the present invention which have a native backbone or those which utilize a modified backbone. Such modifications of the RNA and DNA backbones are described in Milligan et al, J. Med. Chem. 36:14:1924-1936. The antisense compounds created by the state of the art techniques recently described (Milligan et al, J. Med. Chem. 36:14:1924-1936) can be useful in modulating the immune response and thus useful in the treatment or inhibition of transplantation rejection such as kidney, heart, liver, lung, bone marrow, pancreas (islet cells), cornea, small bowel, and skin allografts, and heart valve xenografts; in the treatment or inhibition of autoimmune diseases such as lupus, rheumatoid arthritis, diabetes mellitus, myasthenia gravis, and multiple sclerosis; and diseases of inflammation such as psoriasis, dermatitis, eczema, seborrhea, inflammatory bowel disease, and eye uveitis. The antisense molecules of this invention can have antitumor, antifungal activities, and antiproliferative activities. The compounds of this invention therefore can be also useful in treating solid tumors, adult T-cell leukemia/lymphoma, fungal infections, and hyperproliferative vascular diseases such as restenosis and atherosclerosis. Thus, the present invention also comprises methods for treating the abovementioned maladies and conditions in mammals, preferably in humans. The method comprises administering to a mammal in need thereof an effective amount of the relevant antisense therapeutic agent of this invention.

[0040] When administered for the treatment or inhibition of the above disease states, the antisense molecules of this invention can be administered to a mammal orally, parenterally, intranasally, intrabronchially, transdermally, topically, intravaginally, or rectally.

[0041] It is contemplated that when the antisense molecules of this invention are used as an immunosuppressive or antiinflammatory agent, they can be administered in conjunction with one or more other immunoregulatory agents. Such other immunoregulatory agents include, but are not limited to azathioprine, corticosteroids, such as prednisone and methylprednisolone, cyclophosphamide, rapamycin, cyclosporin A, FK-506, OKT-3, and ATG. By combining the complexes of this invention with such other drugs or agents for inducing immunosuppression or treating inflammatory conditions, the lesser amounts of each of the agents are required to achieve the desired effect. The basis for Such combination therapy was established by Stepkowski whose results showed that the use of a combination of rapamycin and cyclosporin A at subtherapeutic doses significantly prolonged heart allograft survival time. [Transplantation Proc. 23: 507 (1991)].

[0042] Treatment with these antisense compounds will generally be initiated with small dosages less than the optimum dose of the compound. Thereafter the dosage is increased until the optimum effect under the circumstances is reached. Precise dosages will be determined by the administering physician based on experience with the individual subject treated. In general, the antisense compounds of this invention are most desirably administered at a concentration that will afford effective results without causing any harmful or deleterious side effects.

[0043] In light of the therapeutic value of the abovementioned antisense compounds, this invention also includes pharmaceutical compositions containing the antisense RNA and antisense DNA compounds derived from cDNA clones which encode for the 125 kDa, 148 kDa, 208 kDa and 210 kDa proteins of this invention.

[0044] This invention also comprises the following process for isolating the proteins of this invention, as well as the proteins isolated therefrom:

[0045] A process for isolating proteins from mammalian cells, the process comprising the steps of:

[0046] 1. The mammalian cells of interest are grown and harvested. As mentioned previously, the cells may be of T cell origin (e.g. T cell lymphomas, leukemias, normal human T cells), B cell origin (e.g. EBV transformed B cells, normal human B cells), mast cells, or other cell sources sensitive to rapamycin. The cells may be processed shortly after harvesting or may be stored frozen, such as in pellets, prior to processing. The cells which are kept frozen may be stored in a dry ice and ethanol bath, stored frozen at −70-80° C. until use. This step of growing and harvesting the cells of interest may be seen as the first step of this process or as merely preparatory for the present process.

[0047] 2. Cells are lysed in a buffer containing a buffering agent (e.g. HEPES, Tris, pH 7.5), low salt (e.g. 10-50 mM NaCl or KCl), chelating agent (e.g. 1-2 mM EDTA), protease inhibitors (e.g. 0.4 mM PMSF) and a reducing agent (e.g. 2 mM 2-ME or 1-20 μM Dithiothreitol) at a temperature which minimizes protein degradation (e.g. 4° C.). It should be understood that the mammalian cells may be treated in any manner capable of producing cell lysis, including sonic lysis and douncing.

[0048] 3. Unbroken cells and cell nuclei are precleared from lysates by centrifugation at a temperature which minimizes protein degradation (e.g. 4° C.). Centrifugation at, for example, 1600 g for 10 minutes has been found sufficient to preclear the unbroken cells and cell nuclei from the lysates. This step, while not mandatory, provides a clearer preparation for the steps that follow.

[0049] 4. The membrane fraction in the precleared lysate is then concentrated, such as by ultracentrifugation. An example of this concentration would be ultracentrifugation at 100,000 g for 1-1.5 hours.

[0050] 5. The membrane proteins (e.g. transmembrane, integral and membrane associated proteins) are then solubilized. This may be accomplished by incubating the pellet of Step 4 in a buffer containing a detergent which solubilizes the proteins without detrimentally denaturing them, a buffering agent (e.g. 20-50 mM Tris or HEPES, pH 7.2), salt (e.g. 100-200 mM NaCl+20 mM KCl), reducing agent (e.g. 1-2 mM 2-ME or 1-20 mM dithiothreitol), protease inhibitors (e.g. 0.2 mM PMSF, 5 μg/ml aprotinin, leupeptin, pepstatin A and antipain), divalent cations (e.g. 0-5 mM CaCl₂, 0-5 mM MgCl₂) at a temperature which minimizes protein degradation (e.g. 4° C.). Examples of detergents useful in this step are CHAPSO (3-[(3-cholamidopropyl)dimethylammonio]-1-propane sulfonate) or Triton X100 (polyethylene glycol 4-isooctylphenyl ether). After this step, the mixture contains solubilized membrane proteins and non-solubilized cellular debris.

[0051] 6. The solubilized membrane proteins are separated from the non-solubilized cellular debris, such as by ultracentrifugation (eg 100,000 g for 1-1.5 hours) at a temperature which minimizes protein degradation (e.g. 4° C.).

[0052] 7. The supernatant containing solubilized membrane proteins is incubated with an affinity resin in a buffer containing a buffering agent (e.g. 20-50 nM Tris or HEPES, pH 7.2), salt (e.g. 100-200 mM NaCl+20 mM KCl), reducing agent (e.g. 1-2 mM 2-ME or 10-20 mM dithiothreitol), protease inhibitors (e.g. 0.2 mM PMSF, 5 μg/ml aprotinin, leupeptin, pepstatin A and antipain), divalent cations (e.g. 0-5 mM CaCl₂, 0-5 mM MgCl₂) at a temperature and time which allows the absorption of the proteins which bind to affinity resin directly, and minimizes protein degradation (e.g. 4° C.).

[0053] 8. The resin is then removed from the supernatant by centrifugation at a temperature which minimizes protein degradation (e.g. 4° C.).

[0054] 9. The supernatant is then incubated with Rapamycin or Rapamycin analog (IC50 in LAF<500 nM) complexed to fusion protein of FKBP12+protein which enhances the isolation of the desired effector protein and through which the fusion protein binds to an affinity resin or affinity column, such as GST-FKBP12, Histidine oligomer-FKBP12, biotin-FKBP12, etc., in a buffer containing a buffering agent (e.g. 20-50 mM Tris or HEPES, pH 7.2), salt (e.g. 100-200 mM NaCl+20 mM KCl), reducing agent (e.g. 1-2 mM 2-ME or 1-20 mM dithiothreitol), protease inhibitors (e.g. 0.2 mM PMSF, 5 μg/ml aprotinin, leupeptin, pepstatin A and antipain), divalent cations (e.g. 0-5 mM CaCl₂, 0-5 mM MgCl₂) at a temperature and for a time which allows binding of the effector proteins to the fusion FKBP protein:Rapamycin or analog complexes and minimizes protein degradation (e.g. 4° C. and 1-2 hours).

[0055] 10. The mixture of Step 9 containing the effector proteins and fusion FKBP protein:Rapamycin complexes is incubated with an affinity resin at a temperature and for a time which allows binding of the complexes of the effector proteins and fusion FKBP protein:Rapamycin or analog to the affinity resin and minimizes protein degradation (e.g. 4° C. and 0.5-2 hours).

[0056] 11. Most non-specific proteins are rinsed away from the resin using a buffer which dissociates binding of non-specific proteins but not the complex between the desired proteins and RAPA-FKBP, such as a buffer containing a buffering agent (e.g. 20-50 mM Tris or HEPES, pH 7.2), silts (e.g. 100-1000 mM NaCl, KCl), reducing agent (e.g. 1-2 mM 2-ME or 10-20 mM dithiothreitol), protease inhibitors (e.g. 0.2 mM PMSF, 5 μg/ml aprotinin, leupeptin, pepstatin A and antipain), divalent cations (e.g. 0-5 mM CaCl₂, 0-5 mM MgCl₂) and detergent which dissociates binding of non-specific proteins but not the complex between the four proteins and RAPA-fusion FKBP protein such as Triton X100 (Polyethylene glycol 4-isooctyl phenyl ether).

[0057] 12. The effector proteins and the fusion FKBP protein:Rapamycin complexes are eluted from the resin using an appropriate buffer, such as a buffer containing sufficient detergent to dissociate it from resin (e.g. Laemli buffer with or without glycerol or dye, Laemli, Nature 227:680, 1970), or an appropriate eluting compound for the affinity column, such as glutathione, histidine.

[0058] 13. The effector proteins can then be separated by size. This may be accomplished in any manner which separates the proteins by size, including, but not limited to, polyacrylamide gel electrophoresis and size exclusion column chromatography.

[0059] It might also be useful to compare the proteins isolated by a control procedure, that is a procedure which substitutes buffer for the rapamycin or rapamycin analog with an IC₅₀ in LAF<500 nM in step 8, can be used to more easily distinguish proteins which bind to the rapamycin:FKBP complex.

[0060] The proteins of this invention can also be made by recombinant DNA techniques familiar to those skilled in the art. That is, the gene of the protein in question can be cloned by obtaining a partial amino acid sequence by digestion of the protein with an appropriate endopeptidase, such as Lysine C, and isolating the resulting protein fragments by microbore HPLC, followed by fragment sequencing (Matsudaira in A Practical Guide to Protein and Peptide Purification for Microsequencing, Academic Press, San Diego, Calif. 1989). The determined sequence can then be used to make oligonucleotide probes which can be used to screen a human cDNA library, such as those for human T cells, Molt 4, Jurkat, etc, to obtain clones. (Sambrook, Fritsch, and Maniatas, Molecular Cloning, A Laboratory Manual, Cold Spring Harbor Press, 1989) These clones can be used to identify additional clones containing additional sequences until the protein's full gene is cloned (Sambrook, Fritsch, and Maniatas, Molecular Cloning, A Laboratory Manual, Cold Spring Harbor Press, 1989). In a complementary strategy, the gene(s) may be identified by interactive yeast cloning techniques using FKBP12:RAPA as a trap for cloning (Chien et al., Proc. Natl. Acad. Sci. 88: 9578-9582, 1991). These strategies can also be combined to quicken the identification of the clones.

[0061] The relevant cDNA clone can also be expressed in E. coli, yeast, or baculovirus infected cells or mammalian cells using state of the art expression vectors. Isolation can be performed as above or the cDNA can be made as a fusion protein with the fusion partner giving an advantage in isolation (e.g. HIS oligomer, immunoglobulin Fc, glutathione S-transferase, etc). Mutations which result in a soluble form can also be generated by site directed mutagenesis and would give advantages in isolation.

[0062] Homologs in the mouse, rat, monkey, dog and other mammalian species can be obtained using similar procedures. In addition, upon isolation of the human clone of the proteins, the clone can be used to screen for homologs in other mammalian species. These homologs can also be used to develop binding assays and to set up high through put screening assays for compounds, endogenous ligands, exogenous ligands with immunomodulatory activity.

[0063] Compounds, endogenous ligands and exogenous ligands having such immunomodulatory activity would can be useful in modulating the immune response and thus useful in the treatment or inhibition of transplantation rejection such as kidney, heart, liver, lung, bone marrow, pancreas (islet cells), cornea, small bowel, and skin allografts, and heart valve xenografts; in the treatment or inhibition of autoimmune diseases such as lupus, rheumatoid arthritis, diabetes mellitus, myasthenia gravis, and multiple sclerosis; and diseases of inflammation such as psoriasis, dermatitis, eczema, seborrhea, inflammatory bowel disease, and eye uveitis.

[0064] The compounds, endogenous 112 ands and exogenous ligands mentioned above can also have antitumor, antifungal activities, and antiproliferative activities. The compounds of this invention therefore can be also useful in treating solid tumors, adult T-cell leukemia/lymphoma, fungal infections, and hyperproliferative vascular diseases such as restenosis and atherosclerosis.

EXAMPLE 1

[0065] The proteins of the present invention were isolated utilizing a fusion protein of glutathione S-transferase—FK506 binding protein 12 (GST-FKBP). GST-FKBP is produced by a recombinant E. coli containing the plasmid, pGEX-FKBP. The cells were grown, induced with IPTG and the fusion protein was isolated using standard technology described in D. B. Smith and K. S. Johnson, Gene 67, 31, 1988 and K. L. Guan and J. E. Dixon, Anal. Biochem. 192, 262, 1991. The solution containing glutathione and GST-FKBP12 was exchanged 5× using a Centricon 10 filtration unit (Amicon) to remove the glutathione and exchange the buffer.

[0066] Molt 4 cells (1×10⁹) were grown in standard media (RPMI 1640 containing 100 U/ml pennicillin, 100 ug/ml L-glutamine, 10% FCS). The cells were harvested and rinsed 3× with PBS (50 mM phosphate buffer, pH 7.0, 150 mM NaCl), flash frozen in dry-ice ethanol bath and stored at −80° C. On ice, the cells were thawed and lysed using a dounce homogenizer with B pestle in 5 ml of buffer A (10 mM Hepes, pH 7.5, 20 mM KCl, 1 mM EDTA, 0.4 mM PMSF and 2 mM 2-ME). After the debris was cleared by centrifugation at 1600 g for 10 min. and the membrane fraction was concentrated by 100,000 g centrifugation (1 hour), the 100,000 g pellet was incubated in 3 ml buffer B (50 mM Tris, pH 7.2, 100 mM NaCl, 20 mM KCl, 0.2 mM PMSF, 1 mM 2-ME, 2 mM CaCl₂, 2 mM MgCl₂, 5 μg/ml aprotinin, leupeptin, pepstatin A and antipain), containing 12 mM CHAPSO for two hours at 4° C. The solubilized membrane proteins were separated from the debris by a 100,000 g centrifugation. After preabsorption of the supernatant for 3-18 hours with 0.4 ml glutathione sepharose resin swollen in buffer B, the supernatant was incubated with complexed Rapamycin-GST-FKBP12 (preformed by incubation of 660 ug GST-FKBP+60 ug RAPA in buffer B for 1-2 hours, 4° C.) for two hours at 4° C. The supernatant was then incubated for 2 hours at 4° C. with 100 ul glutathione resin (1:1 Buffer B). Nonspecific proteins were rinsed 5× with buffer C (buffer B+0.1% Triton x100) and the proteins eluted from the resin in Laemli buffer by incubation at 95° C. for 3 minutes and microcentrifugation. The proteins were separated by size using a 7% SDS-PAGE followed by silver stain. Four bands corresponding to proteins of molecular weights of 210 kDa, 208 kDa, 148 kDa, and 125 kDa were present in higher concentrations in the sample containing RAPA+GST-FKBP12 vs GST-FKBP alone.

[0067] The mito-en-stimulated thymocyte proliferation assay called the LAP, can be inhibited by rapamycin or analogs such as demethoxyrapamycin and indicates relative activity of rapamycin analogs in immunosuppression. The same proteins were isolated using GST-FKBP complexed with the immunosuppressive analog, demethoxyrapamycin (Table 1). The Diels Alder adducts bound to FKBP12 and inhibited PPlase activity of FKBP12 but did not exhibit detectable immunosuppressive activity and thus do not bind to the target of rapamycin. The use of these two compounds complexed with GST-FKBP12 in the analogous isolation procedure (ie. replacing rapamycin:GST-FKBP12) yielded background levels of the 210 kDa proteins (no rapamycin)(Table 1). FK506, is an immunosuppressive compound which binds to FKBP and and mediates at least some of its effects through the binding of the FK506-FKBP complex with calcineurin. FK506 when complexed with GST-FKBP in an analogous procedure yielded only background levels of the 210 kDa protein (Table 1). TABLE 1 Comparison of Binding of Rapamycin Analog - FKBP12 complexes to 210 kDa Protein Compound 210 kDa LAF PPlase(Ki) RAPA +++ 6 nM 0.12 nM  demethoxyrapamycin +++ 58 nM 4.4 nM Diels Alder adduct (phenyl) ± >1000 nM  12 nM Diels Alder adduct (methyl) ± >1000 nM  12 nM FK506 ± 3 nM* 0.4 nM none (FKBP) ±

[0068] It is known that rapamycin must bind to a member of the FKBP family in order to mediate its effects. To verify that the proteins of this invention bind to the complex RAPA-GST-FKBP and not individually to rapamycin or FKBP12, a modified isolation procedure was employed. The modification consists of using (1) a rapamycin-42-biotin glycinate ester in place of rapamycin (both exhibit equivalent immunosuppressive activity in the LAF assay), (2) no exogenous FKBP and (3) a strepatavidin-conjugated resin in place of glutathione-resin. Only background levels of the 210 kDa protein was isolated using this modified isolation procedure.

[0069] The 210 kDa protein was isolated using the GST-FKBP12-rapamycin complex from BJAB cells (B cell lymphoma) and normal human T lymphocytes purified by Ficoll-Hypaque and T cell columns.

[0070] The results of the partial amino acid composition analysis are set forth in Table 2, below. It should be noted that the percentage of the basic amino acids was not determined. TABLE 2 Com- Re- Re- Concen- Peak ponent tention Peak sponse Peak tration Number Name Time Area Factor Height No./50 μl 9.38 11.09  1 Asp/Asn 12.06 12.47076 0.02344 0.05142 0.30  2 Thr 13.05 2.92898 0.00000 0.00985 0.068  3 Ser 13.78 6.43968 0.00000 0.01995 0.15 15.68  4 Glu/Gln 16.87 25.47273 0.00000 0.05285 0.59 Prp 18.24 0.14  5 Gly 22.35 21.50384 0.00000 0.04645 0.44 22.90  6 Ala 23.73 16.69160 0.00000 0.03113 0.36 26.06 28.81  7 Val 29.39 4.83196 0.00000 0.00605 0.11 Met 32.28  8 Ile 34.10 3.00560 0.2326 0.00782 0.0699  9 Leu 35.09 5.73202 0.02331 0.01372 0.1383 10 nLeu 36.27 20.48232 0.02174 0.04286 0.4453 11 Tyr 38.33 1.44792 0.02618 0.00226 0.0379 12 Phe 40.05 1.25017 0.02703 0.00187 0.0338 13 His 47.79 1.50905 0.02553 0.00580 0.0385 14 51.80 12.66136 0.00000 0.01960 0.0000 15 Lys 53.34 9.90767 0.02283 0.02274 0.2262 Totals 146.53645 0.33436 Not Determined 144.29

EXAMPLE 2

[0071] The 210 kDa (210±20 kDa) protein of this invention was isolated from 4×10¹¹ Molt 4 cells using the affinity matrix protocol as described previously. Bound proteins were eluted from the affinity matrix with 1× Laemli buffer without glycerol and dye (0.0625 M Tris-HCl, ph 6.8, 2% SDS, 0.37M b-mercaptoethanol) and were concentrated 3 consecutive times by centrifugation using centricon 100 (Amicon, Beverly, Mass.) at 4° C. the first two times and at 18° C. the third time. The concentrated sample was eluted from the centricon 100 filter by incubating 2 hours at room temperature with an equal volume of 2× laemli buffer without glycerol and dye the first 2× and 2× laemli buffer the third time. The proteins in the sample were separated by PAGE on a 1.5 mm thick 7% polyacrylamide gel (38:1). The proteins were transferred to polyvinylidine difluoride, PVDF, (Biorad, Hercules, Calif.) in 10× Tris/glycine buffer (Biorad) containing 0.037% SDS at 50 mamps at 4° C. overnight. The proteins on the PVDF were stained with amido black (Biorad) in 10% ethanol, 2% acetic acid and the appropriate band was excised, rinsed with PBS and water and stored frozen.

Sequencing

[0072] The protein (approx. 3 ug) on the PVDF membrane was digested in situ with trypsin using a modification described by J. Fernandez et al, (Anal.Biochem. 201: 255-64, 1992). Briefly, the PVDF was cut into 1 mm² pieces, prewet, and the protein digested in a 100 mM Tris-HCl, pH buffer containing 10% acetonitrile, and 1% reduced triton (CalBiochem) with 0.2 μg trypsin at 37° C. for 6 hours followed by addition of 0.2 ug trypsin and incubation overnight. The fragments were eluted from the membrane by sonication and the buffer containing the fragments were separated by microfuge centifugation. The membranes were backextracted 2× (i.e., 50 ul buffer was added to membranes, sonicated, and centrifuged in a microfuge and solution pooled with the original buffer containing the eluted fragments.) The sample (140-145 ul) was separated by narrow bore high performance liquid chromatography using a Vydac C18 2.1 mm×150 mm reverse phase column on a Hewlett Packard HPLC 1090 with a 40 diode array detector as described previously by W. Lane et al, (J.Protein Chem., 10(2): 151-60, 1991). Multiple fractions were collected and measured for absorption at multiple wavelengths (210, 277 and 292 nm). Optimal fractions were chosen for sequencing based on resolution, symmetry, and ultraviolet absorption and spectra (2210 nm, 277 nm and 292 nm). An aliquot (5%) of the optimal fractions was analyzed for homogeneity and length of fragment by matrix assisted laser desorption time of flight mass spectrometry, MALDE-TOF-MS, on a Finnigan lasermat. Selected optimal fractions were sequenced by automated Edman degradation on an Applied Biosystems 477A protein sequencer using microcartridge and manufacturer's recommended chemistry cycle.

Sequence Comparison

[0073] Comparison was performed using the Intelligenetics suite (Intelligenetics, CA)

Sequences

[0074] Utilizing the methods mentioned above, it was determined that the 210 kDa (210+20 kDa) protein of this invention contains peptide fragments, four of which have amino acid sequences as shown below:

[0075] a) ILLNIEHR;

[0076] B) LIRPYMEPILK;

[0077] c) DXMEAQE; and

[0078] d) QLDHPLPTVHPQVTYAYM(K)

[0079] Those skilled in the art will recognize the one-letter symbols for the amino acids in question (the definitions for which can also be seen at page 21 of the text Biochemistry, Third Edition, W. H. Freeman and Company, ©1988 by Luberi Stryer). Those so skilled will also understand that the X in sequence c) indicates an as yet unidentified amino acid and the parentheses in sequence d) indicates that the amino acid in the position in question is possibly lysine.

[0080] As mentioned previously, the present invention includes fragmented or truncated forms of the proteins mentioned herein. This includes proteins which have as part or all of their amino acid sequence one or more of the four sequences listed as a)-d), above. For the purposes of the claims, below, the proteins referred to as including one or more of the “internal amino acid sequences” are understood to be any protein which contains one of the sequences listed above, whether the protein is comprised wholly of one or more of the sequences a)-d) or whether one or more of the sequences mentioned above form any portion of the protein. This is understood to include all locations on the protein's amino acid sequence including, but not limited to, those sections of the protein which initiate and terminate the protein's amino acid chain.

[0081] These partial amino acid sequences were compared with sequences in the Genbank database. There was identity with the sequence, accession number L34075 (Brown et al., Nature 369, 756-758 (1994)). The cDNA of the SEP gene was cloned as follows: Two micrograms of Molt 4 cDNA (Clontech, Palo Alto, Calif.) in 1×PCR buffer (10 mM Tris-HCl, pH 8.3, 50 mM KCl, 1 mM MgCl, 200 μM DATP, 200 μM dTTP, 200 μM dCTP, 200 μM dGTP; Perkin Elmer,) with 1 unit Taq polymerase (Perkin Elmer), was amplified by Polymerase chain reaction (PCR) at 94 C for 30 sec., 66 C for 4 min for 30 cycles, 72 C for 10 min by three separate reactions containing one of the following pairs of oligomers: CGATCGGTCGACTGCAGCACTTTGGGGATTGTGCTCTC and GCGGCCGCAGCTTTCTTCATGCATGACAACAGCCCAGGC; or GCGGCCGCAAGCTTCAAGTATGCAAGCCTGTGCGGCAAGA and CGATCGGTCGACACCTTCTGCATCAGAGTCAAGTGGTCA; or GCGGCCGCAAGCTTCCTCAGCTCACATCCTTAGAGCTGCA and CGATCGGTCGACTTATTACCAGAAAGGGCACCAGCCAATATA.

[0082] The oligonucleotides were synthesized and isolated by methods previously described and known in the art (Chemical and Enzymatic Synthesis of Gene Fragments, ed. by H. G. Gassin and Anne Lang, Verlag Chemie, FLA, 1982). The resulting PCR products named SEP3, SEP4, and SEP5, respectively, were incubated at 15 C overnight in buffer containing T4 DNA ligase (I unit) and 50 ng pcII which was modified to efficiently ligate PCR products (TA cloning kit, Invitrogen, San Diego, Calif.) to yield PCR-pcII ligated products. The PCR-pcII products were transformed into competent E. coli INValphaF cells obtained commercially from Invitrogen. Miniprep DNA was prepared using the Quiagen miniprep kits (Quiagen, Chatsworth, Calif.) and the clones containing the appropriate sized PCR product were identified by restriction enzyme diaestion with commercially available HindIII or SalI electrophoresis, and comparison to standards. Sep2 and Sep1 cDNA was made using the TimeSaver cDNA synthesis Kit (Pharmacia, Piscataway, N.J.) with the first strand synthesis reaction containing oligodT (0.13 μg) and 250 pmoles of CGATCGGTCGACCAGATGAGCACATCATAGCGCTGATGA or CGATCGGTCGACAAATTCAAAGCTGCCAAGCGTTCGGAG,

[0083] respectively. Sep2 and Sep1 second strand synthesis was performed using the TimeSaver cDNA synthesis kit with the addition of 250 pmoles of GCGGCCGCAAGCTTTGGCTCGAGCAATGGGGCCAGGCA or GCGGCCGCAAGCTTAAGATGCTTGGAACCGCACCTGCCG, CGATCGGTCGACCAGATGAGCACATCATAGCGCTGATGA and GCGGCCGCAAGCTTTGGCTCGAGCAATGGGGCCAGGCA or GCGGCCGCAAGCTTAAGATGCTTGGAACCGCACCTGCCG and CGATCGGTCGACAAATTCAAAGCTGCCAAGCGTTCGGAG,

[0084] respectively. The Sep2 and Sep1 cDNA was then amplified by PCR using CGATCGGTCGACCAGATGAGCACATCATAGCGCTGATGA and GCGGCCGCAAGCTTTGGCTCGAGCAATGGGGCCAGGCA or GCGGCCGCAAGCTTAAGATGCTTGGAACCGCACCTGCCG and CGATCGGTCGACAAATTCAAAGCTGCCAAGCGTTCGGAG,

[0085] respectively as described above. The Sep2 PCR products were cloned int the TA cloning kit (Invitrogen). The Sep 1 PCR products were digested with Hind III and SalI, separated from the pcII vector by agarose electrophoresis. The Sep1 (HindIII-SalI) fragment was isolated using the Sephaglas bandprep kit from Pharmacia and cloned into the HindIII and SalI sites of pUC19 as described (Sambrook et al., Molecular Cloning Cold Spring Harbor, 1989). Ligation of the isolated Sep2(HindIII, AspI) and Sep3(AspI, SalI) fragments or Sep4(HindIII, AccIII/MroI) and Sep5(AccIII/MroI, Sal I) fragments into pUC18(HindIII, SalI) vector and transformation of competent E. coli INValphaF cells (Invitrogen) was performed by techniques known to those skilled in the art (Sambrook et al., Molecular Cloning Cold Spring Harbor, 1989) to obtain pUC18-Sep 23 and pUC18-Sep45 which contain nucleotides 1468-5326 and 4964-7653, respectively, of the full length clone shown in the attached Sequence No. 1. Ligation of the pUC19-Sep1 (EcoRV, SalI), Sep2345 (EcoRV, SalI) fragments and transformation of competent E. coli INValphaF cells (Invitrogen) were performed by techniques known to those skilled in the art (as described by Sambrook et al., Molecular Cloning Cold Spring Harbor, 1989) to obtain the full length clone. The nucleic acid sequence coding for this protein and its amino acid sequence are shown in Sequence No. 1.

[0086] A fusion protein, called glutathione S transferase-sirolimus effector protein, GST-SEP, was engineered by subcloning the Sep4 and Sep5 fragments into the plasmid, pGEX-KG (Guan, K. and Dixon, JE. (1991) Anal. Biochem. 192, 262-267) as follows. Briefly, Sep4 was digested with commercially available HindIII restriction enzyme, the restriction site was filled in with the Klenow fragment of DNA polymerase (Gibco), and the DNA was extracted with phenol-chloroform and ethanol precipitated using techniques known by those skilled in the art (Sambrook et al., Molecular Cloning Cold Spring Harbor, 1989). The SEP4 (HindIII-Klenow) was further digested with MroI restriction enzyme, separated from the pcII vector by agarose electrophoresis and isolated as the fragment SEP4-HindIII-Klenow-MroI. Sep5 fragment was prepared by digestion with SalI and MroI, separated from die pcII vector by agarose electrophoresis and isolated as the fragment SEP5-SalI-MroI. pGEX-KG (Guan, K. and Dixon, J. E. (1991) Anal. Biochem. 192, 262-267) was digested with Nco 1, filled in with the Klenow fragment of DNA polymerase and the DNA was extracted with phenol-chloroform and ethanol precipitated, using techniques of those skilled in the art (Sambrook et al., Molecular Cloning Cold Spring Harbor, 1989). pGEX-KG (NcoI, Klenow) was further digested with Sal 1, separated from the undigested vector by agarose electrophoresis and isolated as the vector PGEX-KG-NcoI-Klenow-SalI, using techniques of those skilled in the art. Ligation of the vector, pGEX-KG-NcoI-Klenow-SalI and Sep 4 (HindIII, MroI) and Sep5 (MroI, SalI) fragments and transformation into E. coli strain INValphaF cells (Invitrogen) using techniques of those skilled in the art yielded the plasmid, pGEX-Sep45. Other E. coli hosts such as BL21 can also be used The DNA and protein sequence of this fusion protein is shown in Sequence No. 2.

[0087] Flag sequences and kinase recoginition domain of heart muscle kinase can be added at the amino terminal end, by methods known in the art (see Chen et al., Gene 1994 Feb. 11; 139 (1): 73-75) within SEP or at the carboxy terminus of SEP, SEP4,5 or other fragments using an oligonucleotide which includes the coding sequence for Asp Tyr Lys Asp Asp Asp Asp Lys. The fusion protein can be isolated by affinity chromatography with anti-flag specific antibodies using the commercially available kits from IBI, New Haven, Conn.

[0088] Transformed host cells containing sequences of this invention have been deposited with the American Type Culture Collection (ATCC), 12301 Parklawn Drive, Rockville, Md. 20852, USA, and have been given the ATCC designations listed below: Sequence ATCC Designation a) pUC19-Sep1(nucleotides 1-1785 of ATCC 69756 Sequence No. 1) b) pUC18-Sep23 (nucleotides 1468-5326 of ATCC 69753 Sequence No. 1) c) pUC18-Sep45 (nucleotides 4964-7653 of ATCC 69754 Sequence No. 1) d) pUC19-Sep1-5 (ATCC 69756 1-7653 ATCC 69829 of sequence 1) e) pGEX-Sep45 plasmids (Sequence 2) ATCC 69755

EXAMPLE 3

[0089] The 210 kDa protein of this invention was also isolated by the techniques described in Example 1 utilizing the following rapamycin analogs:

[0090] a) 42-Deoxy-42-[-(1,1-dimethyletlioxy)-2-oxoethoxy] rapamycin (which is described in U.S. Pat. No. 5,233,036);

[0091] b) 42-[O-[(1,1-Dimethylethyl)dimethylsilyl]] rapamycin (described in U.S. Pat. No. 5,120,842);

[0092] c) Rapamycin 42-ester with N-[1,1-dimethylethoxy)carbonyl]-N-methylglycine (described in U.S. Pat. No. 5,130,307);

[0093] d) Rapamycin 42-ester with 5-(1,1-dimethylethoxy)-2-[[(1,1-dimethylethoxy)carbonyl]amino]-5-oxopentanoic acid ethyl acetate solvate three quarter hydrate (see U.S. Pat. No. 5,130,307);

[0094] e) Rapamycin 42-ester with N-[(1,1-dimethylethoxy)carbonyl]glycylglycine hydrate (see U.S. Pat. No. 5,130,307); and

[0095] f) Rapamycin 42-ester with N2, N6-bis[(1,1-dimethylethoxy)carbonyl]-L-lysine (see U.S. Pat. No. 5,130,307).

1 23 7653 base pairs nucleic acid double linear cDNA to mRNA 1 AAGATGCTTG GAACCGGACC TGCCGCCGCC ACCACCGCTG CCACCACATC TAGCAATGTG 60 AGCGTCCTGC AGCAGTTTGC CAGTGGCCTA AAGAGCCGGA ATGAGGAAAC CAGGGCCAAA 120 GCCGCCAAGG AGCTCCAGCA CTATGTCACC ATGGAACTCC GAGAGATGAG TCAAGAGGAG 180 TCTACTCGCT TCTATGACCA ACTGAACCAT CACATTTTTG AATTGGTTTC CAGCTCAGAT 240 GCCAATGAGA GGAAAGGTGG CATCTTGGCC ATAGCTAGCC TCATAGGAGT GGAAGGTGGG 300 AATGCCACCC GAATTGGCAG ATTTGCCAAC TATCTTCGGA ACCTCCTCCC CTCCAATGAC 360 CCAGTTGTCA TGGAAATGGC ATCCAAGGCC ATTGGCCGTC TTGCCATGGC AGGGGACACT 420 TTTACCGCTG AGTACGTGGA ATTTGAGGTG AAGCGAGCCC TGGAATGGCT GGGTGCTGAC 480 CGCAATGAGG GCCGGAGACA TGCAGCTGTC CTGGTTCTCC GTGAGCTGGC CATCAGCGTC 540 CCTACCTTCT TCTTCCAGCA AGTGCAACCC TTCTTTGACA ACATTTTTGT GGCCGTGTGG 600 GACCCCAAAC AGGCCATCCG TGAGGGAGCT GTAGCCGCCC TTCGTGCCTG TCTGATTCTC 660 ACAACCCAGC GTGAGCCGAA GGAGATGCAG AAGCCTCAGT GGTACAGGCA CACATTTGAA 720 GAAGCAGAGA AGGGATTTGA TGAGACCTTG GCCAAAGAGA AGGGCATGAA TCGGGATGAT 780 CGGATCCATG GAGCCTTGTT GATCCTTAAC GAGCTGGTCC GAATCAGCAG CATGGAGGGA 840 GAGCGTCTGA GAGAAGAAAT GGAAGAAATC ACACAGCAGC AGCTGGTACA CGACAAGTAC 900 TGCAAAGATC TCATGGGCTT CGGAACAAAA CCTCGTCACA TTACCCCCTT CACCAGTTTC 960 CAGGCTGTAC AGCCCCAGCA GTCAAATGCC TTGGTGGGGC TGCTGGGGTA CAGCTCTCAC 1020 CAAGGCCTCA TGGGATTTGG GACCTCCCCC AGTCCAGCTA AGTCCACCCT GGTGGAGAGC 1080 CGGTGTTGCA GAGACTTGAT GGAGGAGAAA TTTGATCAGG TGTGCCAGTG GGTGCTGAAA 1140 TGCAGGAATA GCAAGAACTC GCTGATCCAA ATGACAATCC TTAATTTGTT GCCCCGCTTG 1200 GCTGCATTCC GACCTTCTGC CTTCACAGAT ACCCAGTATC TCCAAGATAC CATGAACCAT 1260 GCCCTAAGCT GTGTCAAGAA GGAGAAGGAA CGTACAGCGG CCTTCCAAGC CCTGGGGCTA 1320 CTTTCTGTGG CTGTGAGGTC TGAGTTTAAG GTCTATTTGC CTCGCGTGCT GGACATCATC 1380 CGAGCGGCCC TGCCCCCAAA GGACTTCGCC CATAAGAGGC AGAAGGCAAT GCAGGTGGAC 1440 GCCACAGTCT TCACTTGCAT CAGCATGCTG GCTCGAGCAA TGGGGCCAGG CATCCAGCAG 1500 GATATCAAGG AGCTGCTGGA GCCCATGCTG GCAGTGGGAC TAAGCCCTGC CCTCACTGCA 1560 GTGCTCTACG ACCTGAGCCG TCAGATTCCA CAGCTAAAGA AGGACATTCA AGATGGGCTA 1620 CTGAAAATGC TGTCCCTGGT CCTTATGCAC AAACCCCTTC GCCACCCAGG CATGCCCAAG 1680 GGCCTGGCCC ATCAGCTGGC CTCTCCTGGC CTCACGACCC TCCCTGAGGC CAGCGATGTG 1740 GGCAGCATCA CTCTTGCCCT CCGAACGCTT GGCAGCTTTG AATTTGAAGG CCACTCTCTG 1800 ACCCAATTTG TTCGCCACTG TGCGGATCAT TTCCTGAACA GTGAGCACAA GGAGATCCGC 1860 ATGGAGGCTG CCCGCACCTG CTCCCGCCTG CTCACACCCT CCATCCACCT CATCAGTGGC 1920 CATGCTCATG TGGTTAGCCA GACCGCAGTG CAAGTGGTGG CAGATGTGCT TAGCAAACTG 1980 CTCGTAGTTG GGATAACAGA TCCTGACCCT GACATTCGCT ACTGTGTCTT GGCGTCCCTG 2040 GACGAGCGCT TTGATGCACA CCTGGCCCAG GCGGAGAACT TGCAGGCCTT GTTTGTGGCT 2100 CTGAATGACC AGGTGTTTGA GATCCGGGAG CTGGCCATCT GCACTGTGGG CCGACTCAGT 2160 AGCATGAACC CTGCCTTTGT CATGCCTTTC CTGCGCAAGA TGCTCATCCA GATTTTGACA 2220 GAGTTGGAGC ACAGTGGGAT TGGAAGAATC AAAGAGCAGA GTGCCCGCAT GCTGGGGCAC 2280 CTGGTCTCCA ATGCCCCCCG ACTCATCCGC CCCTACATGG AGCCTATTCT GAAGGCATTA 2340 ATTTTGAAAC TGAAAGATCC AGACCCTGAT CCAAACCCAG GTGTGATCAA TAATGTCCTG 2400 GCAACAATAG GAGAATTGGC ACAGGTTAGT GGCCTGGAAA TGAGGAAATG GGTTGATGAA 2460 CTTTTTATTA TCATCATGGA CATGCTCCAG GATTCCTCTT TGTTGGCCAA AAGGCAGGTG 2520 GCTCTGTGGA CCCTGGGACA GTTGGTGGCC AGCACTGGCT ATGTAGTAGA GCCCTACAGG 2580 AAGTACCCTA CTTTGCTTGA GGTGCTACTG AATTTTCTGA AGACTGAGCA GAACCAGGGT 2640 ACACGCAGAG AGGCCATCCG TGTGTTAGGG CTTTTAGGGG CTTTGGATCC TTACAAGCAC 2700 AAAGTGAACA TTGGCATGAT AGACCAGTCC CGGGATGCCT CTGCTGTCAG CCTGTCAGAA 2760 TCCAAGTCAA GTCAGGATTC CTCTGACTAT AGCACTAGTG AAATGCTGGT CAACATGGGA 2820 AACTTGCCTC TGGATGAGTT CTACCCAGCT GTGTCCATGG TGGCCCTGAT GCGGATCTTC 2880 CGAGACCAGT CACTCTCTCA TCATCACACC ATGGTTGTCC AGGCCATCAC CTTCATCTTC 2940 AAGTCCCTGG GACTCAAATG TGTGCAGTTC CTGCCCCAGG TCATGCCCAC GTTCCTTAAT 3000 GTCATTCGAG TCTGTGATGG GGCCATCCGG GAATTTTTGT TCCAGCAGCT GGGAATGTTG 3060 GTGTCCTTTG TGAAGAGCCA CATCAGACCT TATATGGATG AAATAGTCAC CCTCATGAGA 3120 GAATTCTGGG TCATGAACAC CTCAATTCAG AGCACGATCA TTCTTCTCAT TGAGCAAATT 3180 GTGGTAGCTC TTGGGGGTGA ATTTAAGCTC TACCTGCCCC AGCTGATCCC ACACATGCTG 3240 CGTGTCTTCA TGCATGACAA CAGCCCAGGC CGCATTGTCT CTATCAAGTT ACTGGCTGCA 3300 ATCCAGCTGT TTGGCGCCAA CCTGGATGAC TACCTGCATT TACTGCTGCC TCCTATTGTT 3360 AAGTTGTTTG ATGCCCCTGA AGCTCCACTG CCATCTCGAA AGGCAGCGCT AGAGACTGTG 3420 GACCGCCTGA CGGAGTCCCT GGATTTCACT GACTATGCCT CCCGGATCAT TCACCCTATT 3480 GTTCGAACAC TGGACCAGAG CCCAGAACTG CGCTCCACAG CCATGGACAC GCTGTCTTCA 3540 CTTGTTTTTC AGCTGGGGAA GAAGTACCAA ATTTTCATTC CAATGGTGAA TAAAGTTCTG 3600 GTGCGACACC GAATCAATCA TCAGCGCTAT GATGTGCTCA TCTGCAGAAT TGTCAAGGGA 3660 TACACACTTG CTGATGAAGA GGAGGATCCT TTGATTTACC AGCATCGGAT GCTTAGGAGT 3720 GGCCAAGGGG ATGCATTGGC TAGTGGACCA GTGGAAACAG GACCCATGAA GAAACTGCAC 3780 GTCAGCACCA TCAACCTCCA AAAGGCCTGG GGCGCTGCCA GGAGGGTCTC CAAAGATGAC 3840 TGGCTGGAAT GGCTGAGACG GCTGAGCCTG GAGCTGCTGA AGGACTCATC ATCGCCCTCC 3900 CTGCGCTCCT GCTGGGCCCT GGCACAGGCC TACAACCCGA TGGCCAGGGA TCTCTTCAAT 3960 GCTGCATTTG TGTCCTGCTG GTCTGAACTG AATGAAGATC AACAGGATGA GCTCATCAGA 4020 AGCATCGAGT TGGCCCTCAC CTCACAAGAC ATCGCTGAAG TCACACAGAC CCTCTTAAAC 4080 TTGGCTGAAT TCATGGAACA CAGTGACAAG GGCCCCCTGC CACTGAGAGA TGACAATGGC 4140 ATTGTTCTGC TGGGTGAGAG AGCTGCCAAG TGCCGAGCAT ATGCCAAAGC ACTACACTAC 4200 AAAGAACTGG AGTTCCAGAA AGGCCCCACC CCTGCCATTC TAGAATCTCT CATCAGCATT 4260 AATAATAAGC TACAGCAGCC GGAGGCAGCG GCCGGAGTGT TAGAATATGC CATGAAACAC 4320 TTTGGAGAGC TGGAGATCCA GGCTACCTGG TATGAGAAAC TGCACGAGTG GGAGGATGCC 4380 CTTGTGGCCT ATGACAAGAA AATGGACACC AACAAGGACG ACCCAGAGCT GATGCTGGGC 4440 CGCATGCGCT GCCTCGAGGC CTTGGGGGAA TGGGGTCAAC TCCACCAGCA GTGCTGTGAA 4500 AAGTGGACCC TGGTTAATGA TGAGACCCAA GCCAAGATGG CCCGGATGGC TGCTGCAGCT 4560 GCATGGGGTT TAGGTCAGTG GGACAGCATG GAAGAATACA CCTGTATGAT CCCTCGGGAC 4620 ACCCATGATG GGGCATTTTA TAGAGCTGTG CTGGCACTGC ATCAGGACCT CTTCTCCTTG 4680 GCACAACAGT GCATTGACAA GGCCAGGGAC CTGCTGGATG CTGAATTAAC TGCAATGGCA 4740 GGAGAGAGTT ACAGTCGGGC ATATGGGGCC ATGGTTTCTT GCCACATGCT GTCCGAGCTG 4800 GAGGAGGTTA TCCAGTACAA ACTTGTCCCC GAGCGACGAG AGATCATCCG CCAGATCTGG 4860 TGGGAGAGAC TGCAGGGCTG CCAGCGTATC GTAGAGGACT GGCAGAAAAT CCTTATGGTG 4920 CGGTCCCTTG TGGTCAGCCC TCATGAAGAC ATGAGAACCT GGCTCAAGTA TGCAAGCCTG 4980 TGCGGCAAGA GTGGCAGGCT GGCTCTTGCT CATAAAACTT TAGTGTTGCT CCTGGGAGTT 5040 GATCCGTCTC GGCAACTTGA CCATCCTCTG CCAACAGTTC ACCCTCAGGT GACCTATGCC 5100 TACATGAAAA ACATGTGGAA GAGTGCCCGC AAGATCGATG CCTTCCAGCA CATGCAGCAT 5160 TTTGTCCAGA CCATGCAGCA ACAGGCCCAG CATGCCATCG CTACTGAGGA CCAGCAGCAT 5220 AAGCAGGAAC TGCACAAGCT CATGGCCCGA TGCTTCCTGA AACTTGGAGA GTGGCAGCTG 5280 AATCTACAGG GCATCAATGA GAGCACAATC CCCAAAGTGC TGCAGTACTA CAGCGCCGCC 5340 ACAGAGCACG ACCGCAGCTG GTACAAGGCC TGGCATGCGT GGGCAGTGAT GAACTTCGAA 5400 GCTGTGCTAC ACTACAAACA TCAGAACCAA GCCCGCGATG AGAAGAAGAA ACTGCGTCAT 5460 GCCAGCGGGG CCAACATCAC CAACGCCACC ACTGCCGCCA CCACGGCCGC CACTGCCACC 5520 ACCACTGCCA GCACCGAGGG CAGCAACAGT GAGAGCGAGG CCGAGAGCAC CGAGAACAGC 5580 CCCACCCCAT CGCCGCTGCA GAAGAAGGTC ACTGAGGATC TGTCCAAAAC CCTCCTGATG 5640 TACACGGTGC CTGCCGTCCA GGGCTTCTTC CGTTCCATCT CCTTGTCACG AGGCAACAAC 5700 CTCCAGGATA CACTCAGAGT TCTCACCTTA TGGTTTGATT ATGGTCACTG GCCAGATGTC 5760 AATGAGGCCT TAGTGGAGGG GGTGAAAGCC ATCCAGATTG ATACCTGGCT ACAGGTTATA 5820 CCTCAGCTCA TTGCAAGAAT TGATACGCCC AGACCCTTGG TGGGACGTCT CATTCACCAG 5880 CTTCTCACAG ACATTGGTCG GTACCACCCC CAGGCCCTCA TCTACCCACT GACAGTGGCT 5940 TCTAAGTCTA CCACGACAGC CCGGCACAAT GCAGCCAACA AGATTCTGAA GAACATGTGT 6000 GAGCACAGCA ACACCCTGGT CCAGCAGGCC ATGATGGTGA GCGAGGAGCT GATCCGAGTG 6060 GCCATCCTCT GGCATGAGAT GTGGCATGAA GGCCTGGAAG AGGCATCTCG TTTGTACTTT 6120 GGGGAAAGGA ACGTGAAAGG CATGTTTGAG GTGCTGGAGC CCTTGCATGC TATGATGGAA 6180 CGGGGCCCCC AGACTCTGAA GGAAACATCC TTTAATCAGG CCTATGGTCG AGATTTAATG 6240 GAGGCCCAAG AGTGGTGCAG GAAGTACATG AAATCAGGGA ATGTCAAGGA CCTCACCCAA 6300 GCCTGGGACC TCTATTATCA TGTGTTCCGA CGAATCTCAA AGCAGCTGCC TCAGCTCACA 6360 TCCTTAGAGC TGCAATATGT TTCCCCAAAA CTTCTGATGT GCCGGGACCT TGAATTGGCT 6420 GTGCCAGGAA CATATGACCC CAACCAGCCA ATCATTCGCA TTCAGTCCAT AGCACCGTCT 6480 TTGCAAGTCA TCACATCCAA GCAGAGGCCC CGGAAATTGA CACTTATGGG CAGCAACGGA 6540 CATGAGTTTG TTTTCCTTCT AAAAGGCCAT GAAGATCTGC GCCAGGATGA GCGTGTGATG 6600 CAGCTCTTCG GCCTGGTTAA CACCCTTCTG GCCAATGACC CAACATCTCT TCGGAAAAAC 6660 CTCAGCATCC AGAGATACGC TGTCATCCCT TTATCGACCA ACTCGGGCCT CATTGGCTGG 6720 GTTCCCCACT GTGACACACT GCACGCCCTC ATCCGGGACT ACAGGGAGAA GAAGAAGATC 6780 CTTCTCAACA TCGAGCATCG CATCATGTTG CGGATGGCTC CGGACTATGA CCACTTGACT 6840 CTGATGCAGA AGGTGGAGGT GTTTGAGCAT GCCGTCAATA ATACAGCTGG GGACGACCTG 6900 GCCAAGCTGC TGTGGCTGAA AAGCCCCAGC TCCGAGGTGT GGTTTGACCG AAGAACCAAT 6960 TATACCCGTT CTTTAGCGGT CATGTCAATG GTTGGGTATA TTTTAGGCCT GGGAGATAGA 7020 CACCCATCCA ACCTGATGCT GGACCGTCTG AGTGGGAAGA TCCTGCACAT TGACTTTGGG 7080 GACTGCTTTG AGGTTGCTAT GACCCGAGAG AAGTTTCCAG AGAAGATTCC ATTTAGACTA 7140 ACAAGAATGT TGACCAATGC TATGGAGGTT ACAGGCCTGG ATGGCAACTA CAGAATCACA 7200 TGCCACACAG TGATGGAGGT GCTGCGAGAG CACAAGGACA GTGTCATGGC CGTGCTGGAA 7260 GCCTTTGTCT ATGACCCCTT GCTGAACTGG AGGCTGATGG ACACAAATAC CAAAGGCAAC 7320 AAGCGATCCC GAACGAGGAC GGATTCCTAC TCTGCTGGCC AGTCAGTCGA AATTTTGGAC 7380 GGTGTGGAAC TTGGAGAGCC AGCCCATAAG AAAACGGGGA CCACAGTGCC AGAATCTATT 7440 CATTCTTTCA TTGGAGACGG TTTGGTGAAA CCAGAGGCCC TAAATAAGAA AGCTATCCAG 7500 ATTATTAACA GGGTTCGAGA TAAGCTCACT GGTCGGGACT TCTCTCATGA TGACACTTTG 7560 GATGTTCCAA CGCAAGTTGA GCTGCTCATC AAACAAGCGA CATCCCATGA AAACCTCTGC 7620 CAGTGCTATA TTGGCTGGTA CCCTTTCTGG TAA 7653 3423 base pairs nucleic acid double linear cDNA to mRNA 2 ATGTCCCCTA TACTAGGTTA TTGGAAAATT AAGGGCCTTG TGCAACCCAC TCGACTTCTT 60 TTGGAATATC TTGAAGAAAA ATATGAAGAG CATTTGTATG AGCGCGATGA AGGTGATAAA 120 TGGCGAAACA AAAAGTTTGA ATTGGGTTTG GAGTTTCCCA ATCTTCCTTA TTATATTGAT 180 GGTGATGTTA AATTAACACA GTCTATGGCC ATCATACGTT ATATAGCTGA CAAGCACAAC 240 ATGTTGGGTG GTTGTCCAAA AGAGCGTGCA GAGATTTCAA TGCTTGAAGG AGCGGTTTTG 300 GATATTAGAT ACGGTGTTTC GAGAATTGCA TATAGTAAAG ACTTTGAAAC TCTCAAAGTT 360 GATTTTCTTA GCAAGCTACC TGAAATGCTG AAAATGTTCG AAGATCGTTT ATGTCATAAA 420 ACATATTTAA ATGGTGATCA TGTAACCCAT CCTGACTTCA TGTTGTATGA CGCTCTTGAT 480 GTTGTTTTAT ACATGGACCC AATGTGCCTG GATGCGTTCC CAAAATTAGT TTGTTTTAAA 540 AAACGTATTG AAGCTATCCC ACAAATTGAT AAGTACTTGA AATCCAGCAA GTATATAGCA 600 TGGCCTTTGC AGGGCTGGCA AGCCACGTTT GGTGGTGGCG ACCATCCTCC AAAATCGGAT 660 CTGGTTCCGC GTGGTGGATC CCCGGGAATT TCCGGTGGTG GTGGTGGTGG AATTCTAGAC 720 GACTCCATGA GCTTCAAGTA TGCAAGCCTG TGCGGCAAGA GTGGCAGGCT GGCTCTTGCT 780 CATAAAACTT TAGTGTTGCT CCTGGGAGTT GATCCGTCTC GGCAACTTGA CCATCCTCTG 840 CCAACAGTTC ACCCTCAGGT GACCTATGCC TACATGAAAA ACATGTGGAA GAGTGCCCGC 900 AAGATCGATG CCTTCCAGCA CATGCAGCAT TTTGTCCAGA CCATGCAGCA ACAGGCCCAG 960 CATGCCATCG CTACTGAGGA CCAGCAGCAT AAGCAGGAAC TGCACAAGCT CATGGCCCGA 1020 TGCTTCCTGA AACTTGGAGA GTGGCAGCTG AATCTACAGG GCATCAATGA GAGCACAATC 1080 CCCAAAGTGC TGCAGTACTA CAGCGCCGCC ACAGAGCACG ACCGCAGCTG GTACAAGGCC 1140 TGGCATGCGT GGGCAGTGAT GAACTTCGAA GCTGTGCTAC ACTACAAACA TCAGAACCAA 1200 GCCCGCGATG AGAAGAAGAA ACTGCGTCAT GCCAGCGGGG CCAACATCAC CAACGCCACC 1260 ACTGCCGCCA CCACGGCCGC CACTGCCACC ACCACTGCCA GCACCGAGGG CAGCAACAGT 1320 GAGAGCGAGG CCGAGAGCAC CGAGAACAGC CCCACCCCAT CGCCGCTGCA GAAGAAGGTC 1380 ACTGAGGATC TGTCCAAAAC CCTCCTGATG TACACGGTGC CTGCCGTCCA GGGCTTCTTC 1440 CGTTCCATCT CCTTGTCACG AGGCAACAAC CTCCAGGATA CACTCAGAGT TCTCACCTTA 1500 TGGTTTGATT ATGGTCACTG GCCAGATGTC AATGAGGCCT TAGTGGAGGG GGTGAAAGCC 1560 ATCCAGATTG ATACCTGGCT ACAGGTTATA CCTCAGCTCA TTGCAAGAAT TGATACGCCC 1620 AGACCCTTGG TGGGACGTCT CATTCACCAG CTTCTCACAG ACATTGGTCG GTACCACCCC 1680 CAGGCCCTCA TCTACCCACT GACAGTGGCT TCTAAGTCTA CCACGACAGC CCGGCACAAT 1740 GCAGCCAACA AGATTCTGAA GAACATGTGT GAGCACAGCA ACACCCTGGT CCAGCAGGCC 1800 ATGATGGTGA GCGAGGAGCT GATCCGAGTG GCCATCCTCT GGCATGAGAT GTGGCATGAA 1860 GGCCTGGAAG AGGCATCTCG TTTGTACTTT GGGGAAAGGA ACGTGAAAGG CATGTTTGAG 1920 GTGCTGGAGC CCTTGCATGC TATGATGGAA CGGGGCCCCC AGACTCTGAA GGAAACATCC 1980 TTTAATCAGG CCTATGGTCG AGATTTAATG GAGGCCCAAG AGTGGTGCAG GAAGTACATG 2040 AAATCAGGGA ATGTCAAGGA CCTCACCCAA GCCTGGGACC TCTATTATCA TGTGTTCCGA 2100 CGAATCTCAA AGCAGCTGCC TCAGCTCACA TCCTTAGAGC TGCAATATGT TTCCCCAAAA 2160 CTTCTGATGT GCCGGGACCT TGAATTGGCT GTGCCAGGAA CATATGACCC CAACCAGCCA 2220 ATCATTCGCA TTCAGTCCAT AGCACCGTCT TTGCAAGTCA TCACATCCAA GCAGAGGCCC 2280 CGGAAATTGA CACTTATGGG CAGCAACGGA CATGAGTTTG TTTTCCTTCT AAAAGGCCAT 2340 GAAGATCTGC GCCAGGATGA GCGTGTGATG CAGCTCTTCG GCCTGGTTAA CACCCTTCTG 2400 GCCAATGACC CAACATCTCT TCGGAAAAAC CTCAGCATCC AGAGATACGC TGTCATCCCT 2460 TTATCGACCA ACTCGGGCCT CATTGGCTGG GTTCCCCACT GTGACACACT GCACGCCCTC 2520 ATCCGGGACT ACAGGGAGAA GAAGAAGATC CTTCTCAACA TCGAGCATCG CATCATGTTG 2580 CGGATGGCTC CGGACTATGA CCACTTGACT CTGATGCAGA AGGTGGAGGT GTTTGAGCAT 2640 GCCGTCAATA ATACAGCTGG GGACGACCTG GCCAAGCTGC TGTGGCTGAA AAGCCCCAGC 2700 TCCGAGGTGT GGTTTGACCG AAGAACCAAT TATACCCGTT CTTTAGCGGT CATGTCAATG 2760 GTTGGGTATA TTTTAGGCCT GGGAGATAGA CACCCATCCA ACCTGATGCT GGACCGTCTG 2820 AGTGGGAAGA TCCTGCACAT TGACTTTGGG GACTGCTTTG AGGTTGCTAT GACCCGAGAG 2880 AAGTTTCCAG AGAAGATTCC ATTTAGACTA ACAAGAATGT TGACCAATGC TATGGAGGTT 2940 ACAGGCCTGG ATGGCAACTA CAGAATCACA TGCCACACAG TGATGGAGGT GCTGCGAGAG 3000 CACAAGGACA GTGTCATGGC CGTGCTGGAA GCCTTTGTCT ATGACCCCTT GCTGAACTGG 3060 AGGCTGATGG ACACAAATAC CAAAGGCAAC AAGCGATCCC GAACGAGGAC GGATTCCTAC 3120 TCTGCTGGCC AGTCAGTCGA AATTTTGGAC GGTGTGGAAC TTGGAGAGCC AGCCCATAAG 3180 AAAACGGGGA CCACAGTGCC AGAATCTATT CATTCTTTCA TTGGAGACGG TTTGGTGAAA 3240 CCAGAGGCCC TAAATAAGAA AGCTATCCAG ATTATTAACA GGGTTCGAGA TAAGCTCACT 3300 GGTCGGGACT TCTCTCATGA TGACACTTTG GATGTTCCAA CGCAAGTTGA GCTGCTCATC 3360 AAACAAGCGA CATCCCATGA AAACCTCTGC CAGTGCTATA TTGGCTGGTA CCCTTTCTGG 3420 TAA 3423 2549 amino acids amino acid single linear peptide 3 Met Leu Gly Thr Gly Pro Ala Ala Ala Thr Thr Ala Ala Thr Thr Ser 1 5 10 15 Ser Asn Val Ser Val Leu Gln Gln Phe Ala Ser Gly Leu Lys Ser Arg 20 25 30 Asn Glu Glu Thr Arg Ala Lys Ala Ala Lys Glu Leu Gln His Tyr Val 35 40 45 Thr Met Glu Leu Arg Glu Met Ser Gln Glu Glu Ser Thr Arg Phe Tyr 50 55 60 Asp Gln Leu Asn His His Ile Phe Glu Leu Val Ser Ser Ser Asp Ala 65 70 75 80 Asn Glu Arg Lys Gly Gly Ile Leu Ala Ile Ala Ser Leu Ile Gly Val 85 90 95 Glu Gly Gly Asn Ala Thr Arg Ile Gly Arg Phe Ala Asn Tyr Leu Arg 100 105 110 Asn Leu Leu Pro Ser Asn Asp Pro Val Val Met Glu Met Ala Ser Lys 115 120 125 Ala Ile Gly Arg Leu Ala Met Ala Gly Asp Thr Phe Thr Ala Glu Tyr 130 135 140 Val Glu Phe Glu Val Lys Arg Ala Leu Glu Trp Leu Gly Ala Asp Arg 145 150 155 160 Asn Glu Gly Arg Arg His Ala Ala Val Leu Val Leu Arg Glu Leu Ala 165 170 175 Ile Ser Val Pro Thr Phe Phe Phe Gln Gln Val Gln Pro Phe Phe Asp 180 185 190 Asn Ile Phe Val Ala Val Trp Asp Pro Lys Gln Ala Ile Arg Glu Gly 195 200 205 Ala Val Ala Ala Leu Arg Ala Cys Leu Ile Leu Thr Thr Gln Arg Glu 210 215 220 Pro Lys Glu Met Gln Lys Pro Gln Trp Tyr Arg His Thr Phe Glu Glu 225 230 235 240 Ala Glu Lys Gly Phe Asp Glu Thr Leu Ala Lys Glu Lys Gly Met Asn 245 250 255 Arg Asp Asp Arg Ile His Gly Ala Leu Leu Ile Leu Asn Glu Leu Val 260 265 270 Arg Ile Ser Ser Met Glu Gly Glu Arg Leu Arg Glu Glu Met Glu Glu 275 280 285 Ile Thr Gln Gln Gln Leu Val His Asp Lys Tyr Cys Lys Asp Leu Met 290 295 300 Gly Phe Gly Thr Lys Pro Arg His Ile Thr Pro Phe Thr Ser Phe Gln 305 310 315 320 Ala Val Gln Pro Gln Gln Ser Asn Ala Leu Val Gly Leu Leu Gly Tyr 325 330 335 Ser Ser His Gln Gly Leu Met Gly Phe Gly Thr Ser Pro Ser Pro Ala 340 345 350 Lys Ser Thr Leu Val Glu Ser Arg Cys Cys Arg Asp Leu Met Glu Glu 355 360 365 Lys Phe Asp Gln Val Cys Gln Trp Val Leu Lys Cys Arg Asn Ser Lys 370 375 380 Asn Ser Leu Ile Gln Met Thr Ile Leu Asn Leu Leu Pro Arg Leu Ala 385 390 395 400 Ala Phe Arg Pro Ser Ala Phe Thr Asp Thr Gln Tyr Leu Gln Asp Thr 405 410 415 Met Asn His Ala Leu Ser Cys Val Lys Lys Glu Lys Glu Arg Thr Ala 420 425 430 Ala Phe Gln Ala Leu Gly Leu Leu Ser Val Ala Val Arg Ser Glu Phe 435 440 445 Lys Val Tyr Leu Pro Arg Val Leu Asp Ile Ile Arg Ala Ala Leu Pro 450 455 460 Pro Lys Asp Phe Ala His Lys Arg Gln Lys Ala Met Gln Val Asp Ala 465 470 475 480 Thr Val Phe Thr Cys Ile Ser Met Leu Ala Arg Ala Met Gly Pro Gly 485 490 495 Ile Gln Gln Asp Ile Lys Glu Leu Leu Glu Pro Met Leu Ala Val Gly 500 505 510 Leu Ser Pro Ala Leu Thr Ala Val Leu Tyr Asp Leu Ser Arg Gln Ile 515 520 525 Pro Gln Leu Lys Lys Asp Ile Gln Asp Gly Leu Leu Lys Met Leu Ser 530 535 540 Leu Val Leu Met His Lys Pro Leu Arg His Pro Gly Met Pro Lys Gly 545 550 555 560 Leu Ala His Gln Leu Ala Ser Pro Gly Leu Thr Thr Leu Pro Glu Ala 565 570 575 Ser Asp Val Gly Ser Ile Thr Leu Ala Leu Arg Thr Leu Gly Ser Phe 580 585 590 Glu Phe Glu Gly His Ser Leu Thr Gln Phe Val Arg His Cys Ala Asp 595 600 605 His Phe Leu Asn Ser Glu His Lys Glu Ile Arg Met Glu Ala Ala Arg 610 615 620 Thr Cys Ser Arg Leu Leu Thr Pro Ser Ile His Leu Ile Ser Gly His 625 630 635 640 Ala His Val Val Ser Gln Thr Ala Val Gln Val Val Ala Asp Val Leu 645 650 655 Ser Lys Leu Leu Val Val Gly Ile Thr Asp Pro Asp Pro Asp Ile Arg 660 665 670 Tyr Cys Val Leu Ala Ser Leu Asp Glu Arg Phe Asp Ala His Leu Ala 675 680 685 Gln Ala Glu Asn Leu Gln Ala Leu Phe Val Ala Leu Asn Asp Gln Val 690 695 700 Phe Glu Ile Arg Glu Leu Ala Ile Cys Thr Val Gly Arg Leu Ser Ser 705 710 715 720 Met Asn Pro Ala Phe Val Met Pro Phe Leu Arg Lys Met Leu Ile Gln 725 730 735 Ile Leu Thr Glu Leu Glu His Ser Gly Ile Gly Arg Ile Lys Glu Gln 740 745 750 Ser Ala Arg Met Leu Gly His Leu Val Ser Asn Ala Pro Arg Leu Ile 755 760 765 Arg Pro Tyr Met Glu Pro Ile Leu Lys Ala Leu Ile Leu Lys Leu Lys 770 775 780 Asp Pro Asp Pro Asp Pro Asn Pro Gly Val Ile Asn Asn Val Leu Ala 785 790 795 800 Thr Ile Gly Glu Leu Ala Gln Val Ser Gly Leu Glu Met Arg Lys Trp 805 810 815 Val Asp Glu Leu Phe Ile Ile Ile Met Asp Met Leu Gln Asp Ser Ser 820 825 830 Leu Leu Ala Lys Arg Gln Val Ala Leu Trp Thr Leu Gly Gln Leu Val 835 840 845 Ala Ser Thr Gly Tyr Val Val Glu Pro Tyr Arg Lys Tyr Pro Thr Leu 850 855 860 Leu Glu Val Leu Leu Asn Phe Leu Lys Thr Glu Gln Asn Gln Gly Thr 865 870 875 880 Arg Arg Glu Ala Ile Arg Val Leu Gly Leu Leu Gly Ala Leu Asp Pro 885 890 895 Tyr Lys His Lys Val Asn Ile Gly Met Ile Asp Gln Ser Arg Asp Ala 900 905 910 Ser Ala Val Ser Leu Ser Glu Ser Lys Ser Ser Gln Asp Ser Ser Asp 915 920 925 Tyr Ser Thr Ser Glu Met Leu Val Asn Met Gly Asn Leu Pro Leu Asp 930 935 940 Glu Phe Tyr Pro Ala Val Ser Met Val Ala Leu Met Arg Ile Phe Arg 945 950 955 960 Asp Gln Ser Leu Ser His His His Thr Met Val Val Gln Ala Ile Thr 965 970 975 Phe Ile Phe Lys Ser Leu Gly Leu Lys Cys Val Gln Phe Leu Pro Gln 980 985 990 Val Met Pro Thr Phe Leu Asn Val Ile Arg Val Cys Asp Gly Ala Ile 995 1000 1005 Arg Glu Phe Leu Phe Gln Gln Leu Gly Met Leu Val Ser Phe Val Lys 1010 1015 1020 Ser His Ile Arg Pro Tyr Met Asp Glu Ile Val Thr Leu Met Arg Glu 1025 1030 1035 1040 Phe Trp Val Met Asn Thr Ser Ile Gln Ser Thr Ile Ile Leu Leu Ile 1045 1050 1055 Glu Gln Ile Val Val Ala Leu Gly Gly Glu Phe Lys Leu Tyr Leu Pro 1060 1065 1070 Gln Leu Ile Pro His Met Leu Arg Val Phe Met His Asp Asn Ser Pro 1075 1080 1085 Gly Arg Ile Val Ser Ile Lys Leu Leu Ala Ala Ile Gln Leu Phe Gly 1090 1095 1100 Ala Asn Leu Asp Asp Tyr Leu His Leu Leu Leu Pro Pro Ile Val Lys 1105 1110 1115 1120 Leu Phe Asp Ala Pro Glu Ala Pro Leu Pro Ser Arg Lys Ala Ala Leu 1125 1130 1135 Glu Thr Val Asp Arg Leu Thr Glu Ser Leu Asp Phe Thr Asp Tyr Ala 1140 1145 1150 Ser Arg Ile Ile His Pro Ile Val Arg Thr Leu Asp Gln Ser Pro Glu 1155 1160 1165 Leu Arg Ser Thr Ala Met Asp Thr Leu Ser Ser Leu Val Phe Gln Leu 1170 1175 1180 Gly Lys Lys Tyr Gln Ile Phe Ile Pro Met Val Asn Lys Val Leu Val 1185 1190 1195 1200 Arg His Arg Ile Asn His Gln Arg Tyr Asp Val Leu Ile Cys Arg Ile 1205 1210 1215 Val Lys Gly Tyr Thr Leu Ala Asp Glu Glu Glu Asp Pro Leu Ile Tyr 1220 1225 1230 Gln His Arg Met Leu Arg Ser Gly Gln Gly Asp Ala Leu Ala Ser Gly 1235 1240 1245 Pro Val Glu Thr Gly Pro Met Lys Lys Leu His Val Ser Thr Ile Asn 1250 1255 1260 Leu Gln Lys Ala Trp Gly Ala Ala Arg Arg Val Ser Lys Asp Asp Trp 1265 1270 1275 1280 Leu Glu Trp Leu Arg Arg Leu Ser Leu Glu Leu Leu Lys Asp Ser Ser 1285 1290 1295 Ser Pro Ser Leu Arg Ser Cys Trp Ala Leu Ala Gln Ala Tyr Asn Pro 1300 1305 1310 Met Ala Arg Asp Leu Phe Asn Ala Ala Phe Val Ser Cys Trp Ser Glu 1315 1320 1325 Leu Asn Glu Asp Gln Gln Asp Glu Leu Ile Arg Ser Ile Glu Leu Ala 1330 1335 1340 Leu Thr Ser Gln Asp Ile Ala Glu Val Thr Gln Thr Leu Leu Asn Leu 1345 1350 1355 1360 Ala Glu Phe Met Glu His Ser Asp Lys Gly Pro Leu Pro Leu Arg Asp 1365 1370 1375 Asp Asn Gly Ile Val Leu Leu Gly Glu Arg Ala Ala Lys Cys Arg Ala 1380 1385 1390 Tyr Ala Lys Ala Leu His Tyr Lys Glu Leu Glu Phe Gln Lys Gly Pro 1395 1400 1405 Thr Pro Ala Ile Leu Glu Ser Leu Ile Ser Ile Asn Asn Lys Leu Gln 1410 1415 1420 Gln Pro Glu Ala Ala Ala Gly Val Leu Glu Tyr Ala Met Lys His Phe 1425 1430 1435 1440 Gly Glu Leu Glu Ile Gln Ala Thr Trp Tyr Glu Lys Leu His Glu Trp 1445 1450 1455 Glu Asp Ala Leu Val Ala Tyr Asp Lys Lys Met Asp Thr Asn Lys Asp 1460 1465 1470 Asp Pro Glu Leu Met Leu Gly Arg Met Arg Cys Leu Glu Ala Leu Gly 1475 1480 1485 Glu Trp Gly Gln Leu His Gln Gln Cys Cys Glu Lys Trp Thr Leu Val 1490 1495 1500 Asn Asp Glu Thr Gln Ala Lys Met Ala Arg Met Ala Ala Ala Ala Ala 1505 1510 1515 1520 Trp Gly Leu Gly Gln Trp Asp Ser Met Glu Glu Tyr Thr Cys Met Ile 1525 1530 1535 Pro Arg Asp Thr His Asp Gly Ala Phe Tyr Arg Ala Val Leu Ala Leu 1540 1545 1550 His Gln Asp Leu Phe Ser Leu Ala Gln Gln Cys Ile Asp Lys Ala Arg 1555 1560 1565 Asp Leu Leu Asp Ala Glu Leu Thr Ala Met Ala Gly Glu Ser Tyr Ser 1570 1575 1580 Arg Ala Tyr Gly Ala Met Val Ser Cys His Met Leu Ser Glu Leu Glu 1585 1590 1595 1600 Glu Val Ile Gln Tyr Lys Leu Val Pro Glu Arg Arg Glu Ile Ile Arg 1605 1610 1615 Gln Ile Trp Trp Glu Arg Leu Gln Gly Cys Gln Arg Ile Val Glu Asp 1620 1625 1630 Trp Gln Lys Ile Leu Met Val Arg Ser Leu Val Val Ser Pro His Glu 1635 1640 1645 Asp Met Arg Thr Trp Leu Lys Tyr Ala Ser Leu Cys Gly Lys Ser Gly 1650 1655 1660 Arg Leu Ala Leu Ala His Lys Thr Leu Val Leu Leu Leu Gly Val Asp 1665 1670 1675 1680 Pro Ser Arg Gln Leu Asp His Pro Leu Pro Thr Val His Pro Gln Val 1685 1690 1695 Thr Tyr Ala Tyr Met Lys Asn Met Trp Lys Ser Ala Arg Lys Ile Asp 1700 1705 1710 Ala Phe Gln His Met Gln His Phe Val Gln Thr Met Gln Gln Gln Ala 1715 1720 1725 Gln His Ala Ile Ala Thr Glu Asp Gln Gln His Lys Gln Glu Leu His 1730 1735 1740 Lys Leu Met Ala Arg Cys Phe Leu Lys Leu Gly Glu Trp Gln Leu Asn 1745 1750 1755 1760 Leu Gln Gly Ile Asn Glu Ser Thr Ile Pro Lys Val Leu Gln Tyr Tyr 1765 1770 1775 Ser Ala Ala Thr Glu His Asp Arg Ser Trp Tyr Lys Ala Trp His Ala 1780 1785 1790 Trp Ala Val Met Asn Phe Glu Ala Val Leu His Tyr Lys His Gln Asn 1795 1800 1805 Gln Ala Arg Asp Glu Lys Lys Lys Leu Arg His Ala Ser Gly Ala Asn 1810 1815 1820 Ile Thr Asn Ala Thr Thr Ala Ala Thr Thr Ala Ala Thr Ala Thr Thr 1825 1830 1835 1840 Thr Ala Ser Thr Glu Gly Ser Asn Ser Glu Ser Glu Ala Glu Ser Thr 1845 1850 1855 Glu Asn Ser Pro Thr Pro Ser Pro Leu Gln Lys Lys Val Thr Glu Asp 1860 1865 1870 Leu Ser Lys Thr Leu Leu Met Tyr Thr Val Pro Ala Val Gln Gly Phe 1875 1880 1885 Phe Arg Ser Ile Ser Leu Ser Arg Gly Asn Asn Leu Gln Asp Thr Leu 1890 1895 1900 Arg Val Leu Thr Leu Trp Phe Asp Tyr Gly His Trp Pro Asp Val Asn 1905 1910 1915 1920 Glu Ala Leu Val Glu Gly Val Lys Ala Ile Gln Ile Asp Thr Trp Leu 1925 1930 1935 Gln Val Ile Pro Gln Leu Ile Ala Arg Ile Asp Thr Pro Arg Pro Leu 1940 1945 1950 Val Gly Arg Leu Ile His Gln Leu Leu Thr Asp Ile Gly Arg Tyr His 1955 1960 1965 Pro Gln Ala Leu Ile Tyr Pro Leu Thr Val Ala Ser Lys Ser Thr Thr 1970 1975 1980 Thr Ala Arg His Asn Ala Ala Asn Lys Ile Leu Lys Asn Met Cys Glu 1985 1990 1995 2000 His Ser Asn Thr Leu Val Gln Gln Ala Met Met Val Ser Glu Glu Leu 2005 2010 2015 Ile Arg Val Ala Ile Leu Trp His Glu Met Trp His Glu Gly Leu Glu 2020 2025 2030 Glu Ala Ser Arg Leu Tyr Phe Gly Glu Arg Asn Val Lys Gly Met Phe 2035 2040 2045 Glu Val Leu Glu Pro Leu His Ala Met Met Glu Arg Gly Pro Gln Thr 2050 2055 2060 Leu Lys Glu Thr Ser Phe Asn Gln Ala Tyr Gly Arg Asp Leu Met Glu 2065 2070 2075 2080 Ala Gln Glu Trp Cys Arg Lys Tyr Met Lys Ser Gly Asn Val Lys Asp 2085 2090 2095 Leu Thr Gln Ala Trp Asp Leu Tyr Tyr His Val Phe Arg Arg Ile Ser 2100 2105 2110 Lys Gln Leu Pro Gln Leu Thr Ser Leu Glu Leu Gln Tyr Val Ser Pro 2115 2120 2125 Lys Leu Leu Met Cys Arg Asp Leu Glu Leu Ala Val Pro Gly Thr Tyr 2130 2135 2140 Asp Pro Asn Gln Pro Ile Ile Arg Ile Gln Ser Ile Ala Pro Ser Leu 2145 2150 2155 2160 Gln Val Ile Thr Ser Lys Gln Arg Pro Arg Lys Leu Thr Leu Met Gly 2165 2170 2175 Ser Asn Gly His Glu Phe Val Phe Leu Leu Lys Gly His Glu Asp Leu 2180 2185 2190 Arg Gln Asp Glu Arg Val Met Gln Leu Phe Gly Leu Val Asn Thr Leu 2195 2200 2205 Leu Ala Asn Asp Pro Thr Ser Leu Arg Lys Asn Leu Ser Ile Gln Arg 2210 2215 2220 Tyr Ala Val Ile Pro Leu Ser Thr Asn Ser Gly Leu Ile Gly Trp Val 2225 2230 2235 2240 Pro His Cys Asp Thr Leu His Ala Leu Ile Arg Asp Tyr Arg Glu Lys 2245 2250 2255 Lys Lys Ile Leu Leu Asn Ile Glu His Arg Ile Met Leu Arg Met Ala 2260 2265 2270 Pro Asp Tyr Asp His Leu Thr Leu Met Gln Lys Val Glu Val Phe Glu 2275 2280 2285 His Ala Val Asn Asn Thr Ala Gly Asp Asp Leu Ala Lys Leu Leu Trp 2290 2295 2300 Leu Lys Ser Pro Ser Ser Glu Val Trp Phe Asp Arg Arg Thr Asn Tyr 2305 2310 2315 2320 Thr Arg Ser Leu Ala Val Met Ser Met Val Gly Tyr Ile Leu Gly Leu 2325 2330 2335 Gly Asp Arg His Pro Ser Asn Leu Met Leu Asp Arg Leu Ser Gly Lys 2340 2345 2350 Ile Leu His Ile Asp Phe Gly Asp Cys Phe Glu Val Ala Met Thr Arg 2355 2360 2365 Glu Lys Phe Pro Glu Lys Ile Pro Phe Arg Leu Thr Arg Met Leu Thr 2370 2375 2380 Asn Ala Met Glu Val Thr Gly Leu Asp Gly Asn Tyr Arg Ile Thr Cys 2385 2390 2395 2400 His Thr Val Met Glu Val Leu Arg Glu His Lys Asp Ser Val Met Ala 2405 2410 2415 Val Leu Glu Ala Phe Val Tyr Asp Pro Leu Leu Asn Trp Arg Leu Met 2420 2425 2430 Asp Thr Asn Thr Lys Gly Asn Lys Arg Ser Arg Thr Arg Thr Asp Ser 2435 2440 2445 Tyr Ser Ala Gly Gln Ser Val Glu Ile Leu Asp Gly Val Glu Leu Gly 2450 2455 2460 Glu Pro Ala His Lys Lys Thr Gly Thr Thr Val Pro Glu Ser Ile His 2465 2470 2475 2480 Ser Phe Ile Gly Asp Gly Leu Val Lys Pro Glu Ala Leu Asn Lys Lys 2485 2490 2495 Ala Ile Gln Ile Ile Asn Arg Val Arg Asp Lys Leu Thr Gly Arg Asp 2500 2505 2510 Phe Ser His Asp Asp Thr Leu Asp Val Pro Thr Gln Val Glu Leu Leu 2515 2520 2525 Ile Lys Gln Ala Thr Ser His Glu Asn Leu Cys Gln Cys Tyr Ile Gly 2530 2535 2540 Trp Tyr Pro Phe Trp 2545 1140 amino acids amino acid single linear peptide 4 Met Ser Pro Ile Leu Gly Tyr Trp Lys Ile Lys Gly Leu Val Gln Pro 1 5 10 15 Thr Arg Leu Leu Leu Glu Tyr Leu Glu Glu Lys Tyr Glu Glu His Leu 20 25 30 Tyr Glu Arg Asp Glu Gly Asp Lys Trp Arg Asn Lys Lys Phe Glu Leu 35 40 45 Gly Leu Glu Phe Pro Asn Leu Pro Tyr Tyr Ile Asp Gly Asp Val Lys 50 55 60 Leu Thr Gln Ser Met Ala Ile Ile Arg Tyr Ile Ala Asp Lys His Asn 65 70 75 80 Met Leu Gly Gly Cys Pro Lys Glu Arg Ala Glu Ile Ser Met Leu Glu 85 90 95 Gly Ala Val Leu Asp Ile Arg Tyr Gly Val Ser Arg Ile Ala Tyr Ser 100 105 110 Lys Asp Phe Glu Thr Leu Lys Val Asp Phe Leu Ser Lys Leu Pro Glu 115 120 125 Met Leu Lys Met Phe Glu Asp Arg Leu Cys His Lys Thr Tyr Leu Asn 130 135 140 Gly Asp His Val Thr His Pro Asp Phe Met Leu Tyr Asp Ala Leu Asp 145 150 155 160 Val Val Leu Tyr Met Asp Pro Met Cys Leu Asp Ala Phe Pro Lys Leu 165 170 175 Val Cys Phe Lys Lys Arg Ile Glu Ala Ile Pro Gln Ile Asp Lys Tyr 180 185 190 Leu Lys Ser Ser Lys Tyr Ile Ala Trp Pro Leu Gln Gly Trp Gln Ala 195 200 205 Thr Phe Gly Gly Gly Asp His Pro Pro Lys Ser Asp Leu Val Pro Arg 210 215 220 Gly Gly Ser Pro Gly Ile Ser Gly Gly Gly Gly Gly Gly Ile Leu Asp 225 230 235 240 Asp Ser Met Ser Phe Lys Tyr Ala Ser Leu Cys Gly Lys Ser Gly Arg 245 250 255 Leu Ala Leu Ala His Lys Thr Leu Val Leu Leu Leu Gly Val Asp Pro 260 265 270 Ser Arg Gln Leu Asp His Pro Leu Pro Thr Val His Pro Gln Val Thr 275 280 285 Tyr Ala Tyr Met Lys Asn Met Trp Lys Ser Ala Arg Lys Ile Asp Ala 290 295 300 Phe Gln His Met Gln His Phe Val Gln Thr Met Gln Gln Gln Ala Gln 305 310 315 320 His Ala Ile Ala Thr Glu Asp Gln Gln His Lys Gln Glu Leu His Lys 325 330 335 Leu Met Ala Arg Cys Phe Leu Lys Leu Gly Glu Trp Gln Leu Asn Leu 340 345 350 Gln Gly Ile Asn Glu Ser Thr Ile Pro Lys Val Leu Gln Tyr Tyr Ser 355 360 365 Ala Ala Thr Glu His Asp Arg Ser Trp Tyr Lys Ala Trp His Ala Trp 370 375 380 Ala Val Met Asn Phe Glu Ala Val Leu His Tyr Lys His Gln Asn Gln 385 390 395 400 Ala Arg Asp Glu Lys Lys Lys Leu Arg His Ala Ser Gly Ala Asn Ile 405 410 415 Thr Asn Ala Thr Thr Ala Ala Thr Thr Ala Ala Thr Ala Thr Thr Thr 420 425 430 Ala Ser Thr Glu Gly Ser Asn Ser Glu Ser Glu Ala Glu Ser Thr Glu 435 440 445 Asn Ser Pro Thr Pro Ser Pro Leu Gln Lys Lys Val Thr Glu Asp Leu 450 455 460 Ser Lys Thr Leu Leu Met Tyr Thr Val Pro Ala Val Gln Gly Phe Phe 465 470 475 480 Arg Ser Ile Ser Leu Ser Arg Gly Asn Asn Leu Gln Asp Thr Leu Arg 485 490 495 Val Leu Thr Leu Trp Phe Asp Tyr Gly His Trp Pro Asp Val Asn Glu 500 505 510 Ala Leu Val Glu Gly Val Lys Ala Ile Gln Ile Asp Thr Trp Leu Gln 515 520 525 Val Ile Pro Gln Leu Ile Ala Arg Ile Asp Thr Pro Arg Pro Leu Val 530 535 540 Gly Arg Leu Ile His Gln Leu Leu Thr Asp Ile Gly Arg Tyr His Pro 545 550 555 560 Gln Ala Leu Ile Tyr Pro Leu Thr Val Ala Ser Lys Ser Thr Thr Thr 565 570 575 Ala Arg His Asn Ala Ala Asn Lys Ile Leu Lys Asn Met Cys Glu His 580 585 590 Ser Asn Thr Leu Val Gln Gln Ala Met Met Val Ser Glu Glu Leu Ile 595 600 605 Arg Val Ala Ile Leu Trp His Glu Met Trp His Glu Gly Leu Glu Glu 610 615 620 Ala Ser Arg Leu Tyr Phe Gly Glu Arg Asn Val Lys Gly Met Phe Glu 625 630 635 640 Val Leu Glu Pro Leu His Ala Met Met Glu Arg Gly Pro Gln Thr Leu 645 650 655 Lys Glu Thr Ser Phe Asn Gln Ala Tyr Gly Arg Asp Leu Met Glu Ala 660 665 670 Gln Glu Trp Cys Arg Lys Tyr Met Lys Ser Gly Asn Val Lys Asp Leu 675 680 685 Thr Gln Ala Trp Asp Leu Tyr Tyr His Val Phe Arg Arg Ile Ser Lys 690 695 700 Gln Leu Pro Gln Leu Thr Ser Leu Glu Leu Gln Tyr Val Ser Pro Lys 705 710 715 720 Leu Leu Met Cys Arg Asp Leu Glu Leu Ala Val Pro Gly Thr Tyr Asp 725 730 735 Pro Asn Gln Pro Ile Ile Arg Ile Gln Ser Ile Ala Pro Ser Leu Gln 740 745 750 Val Ile Thr Ser Lys Gln Arg Pro Arg Lys Leu Thr Leu Met Gly Ser 755 760 765 Asn Gly His Glu Phe Val Phe Leu Leu Lys Gly His Glu Asp Leu Arg 770 775 780 Gln Asp Glu Arg Val Met Gln Leu Phe Gly Leu Val Asn Thr Leu Leu 785 790 795 800 Ala Asn Asp Pro Thr Ser Leu Arg Lys Asn Leu Ser Ile Gln Arg Tyr 805 810 815 Ala Val Ile Pro Leu Ser Thr Asn Ser Gly Leu Ile Gly Trp Val Pro 820 825 830 His Cys Asp Thr Leu His Ala Leu Ile Arg Asp Tyr Arg Glu Lys Lys 835 840 845 Lys Ile Leu Leu Asn Ile Glu His Arg Ile Met Leu Arg Met Ala Pro 850 855 860 Asp Tyr Asp His Leu Thr Leu Met Gln Lys Val Glu Val Phe Glu His 865 870 875 880 Ala Val Asn Asn Thr Ala Gly Asp Asp Leu Ala Lys Leu Leu Trp Leu 885 890 895 Lys Ser Pro Ser Ser Glu Val Trp Phe Asp Arg Arg Thr Asn Tyr Thr 900 905 910 Arg Ser Leu Ala Val Met Ser Met Val Gly Tyr Ile Leu Gly Leu Gly 915 920 925 Asp Arg His Pro Ser Asn Leu Met Leu Asp Arg Leu Ser Gly Lys Ile 930 935 940 Leu His Ile Asp Phe Gly Asp Cys Phe Glu Val Ala Met Thr Arg Glu 945 950 955 960 Lys Phe Pro Glu Lys Ile Pro Phe Arg Leu Thr Arg Met Leu Thr Asn 965 970 975 Ala Met Glu Val Thr Gly Leu Asp Gly Asn Tyr Arg Ile Thr Cys His 980 985 990 Thr Val Met Glu Val Leu Arg Glu His Lys Asp Ser Val Met Ala Val 995 1000 1005 Leu Glu Ala Phe Val Tyr Asp Pro Leu Leu Asn Trp Arg Leu Met Asp 1010 1015 1020 Thr Asn Thr Lys Gly Asn Lys Arg Ser Arg Thr Arg Thr Asp Ser Tyr 1025 1030 1035 1040 Ser Ala Gly Gln Ser Val Glu Ile Leu Asp Gly Val Glu Leu Gly Glu 1045 1050 1055 Pro Ala His Lys Lys Thr Gly Thr Thr Val Pro Glu Ser Ile His Ser 1060 1065 1070 Phe Ile Gly Asp Gly Leu Val Lys Pro Glu Ala Leu Asn Lys Lys Ala 1075 1080 1085 Ile Gln Ile Ile Asn Arg Val Arg Asp Lys Leu Thr Gly Arg Asp Phe 1090 1095 1100 Ser His Asp Asp Thr Leu Asp Val Pro Thr Gln Val Glu Leu Leu Ile 1105 1110 1115 1120 Lys Gln Ala Thr Ser His Glu Asn Leu Cys Gln Cys Tyr Ile Gly Trp 1125 1130 1135 Tyr Pro Phe Trp 1140 8 amino acids amino acid single linear peptide 5 Ile Leu Leu Asn Ile Glu His Arg 1 5 11 amino acids amino acid single linear peptide 6 Leu Ile Arg Pro Tyr Met Glu Pro Ile Leu Lys 1 5 10 7 amino acids amino acid single linear peptide 7 Asp Xaa Met Glu Ala Gln Glu 1 5 19 amino acids amino acid single linear peptide 8 Gln Leu Asp His Pro Leu Pro Thr Val His Pro Gln Val Thr Tyr Ala 1 5 10 15 Tyr Met Lys 38 base pairs nucleic acid single linear DNA (genomic) 9 CGATCGGTCG ACTGCAGCAC TTTGGGGATT GTGCTCTC 38 39 base pairs nucleic acid single linear DNA (genomic) 10 GCGGCCGCAG CTTTCTTCAT GCATGACAAC AGCCCAGGC 39 40 base pairs nucleic acid single linear DNA (genomic) 11 GCGGCCGCAA GCTTCAAGTA TGCAAGCCTG TGCGGCAAGA 40 39 base pairs nucleic acid single linear DNA (genomic) 12 CGATCGGTCG ACACCTTCTG CATCAGAGTC AAGTGGTCA 39 40 base pairs nucleic acid single linear DNA (genomic) 13 GCGGCCGCAA GCTTCCTCAG CTCACATCCT TAGAGCTGCA 40 42 base pairs nucleic acid single linear DNA (genomic) 14 CGATCGGTCG ACTTATTACC AGAAAGGGCA CCAGCCAATA TA 42 39 base pairs nucleic acid single linear DNA (genomic) 15 CGATCGGTCG ACCAGATGAG CACATCATAG CGCTGATGA 39 39 base pairs nucleic acid single linear DNA (genomic) 16 CGATCGGTCG ACAAATTCAA AGCTGCCAAG CGTTCGGAG 39 38 base pairs nucleic acid single linear DNA (genomic) 17 GCGGCCGCAA GCTTTGGCTC GAGCAATGGG GCCAGGCA 38 39 base pairs nucleic acid single linear DNA (genomic) 18 GCGGCCGCAA GCTTAAGATG CTTGGAACCG CACCTGCCG 39 39 base pairs nucleic acid single linear DNA (genomic) 19 CGATCGGTCG ACCAGATGAG CACATCATAG CGCTGATGA 39 38 base pairs nucleic acid single linear DNA (genomic) 20 GCGGCCGCAA GCTTTGGCTC GAGCAATGGG GCCAGGCA 38 39 base pairs nucleic acid single linear DNA (genomic) 21 GCGGCCGCAA GCTTAAGATG CTTGGAACCG CACCTGCCG 39 39 base pairs nucleic acid single linear DNA (genomic) 22 CGATCGGTCG ACAAATTCAA AGCTGCCAAG CGTTCGGAG 39 8 amino acids amino acid single linear peptide 23 Asp Tyr Lys Asp Asp Asp Asp Lys 1 5 

What is claimed:
 1. A protein of mammalian origin having a molecular weight of about 125 kDa which binds to a GST-FKBP-Rapamycin complex.
 2. A protein of claim 1 which is of human origin.
 3. A recombinantly produced protein of mammalian origin having a molecular weight of about 125 kDa which binds to a GST-FKBP-Rapamycin complex.
 4. A recombinantly produced protein comprising a partial amino acid sequence of the protein of claim
 3. 5. cDNA of mammalian origin which encodes a 125 kDa protein which binds to a GST-FKBP-Rapamycin.
 6. DNA encoding for a protein of mammalian origin having a molecular weight of about 125 kDa which binds to a GST-FKBP-Rapamycin complex.
 7. Antisense RNA derived from a cDNA clone, the cDNA clone encoding for a protein of mammalian origin having a molecular weight of about 125 kDa which binds to a GST-FKBP-Rapamycin complex.
 8. Antisense DNA derived from a cDNA clone, the cDNA clone encoding for a protein of mammalian origin having a molecular weight of about 125 kDa which binds to a GST-FKBP-Rapamycin complex.
 9. A protein of mammalian origin having a molecular weight of about 148 kDa which binds to a GST-FKBP-Rapamycin complex.
 10. A protein of claim 9 which is of human origin.
 11. A recombinantly produced protein of mammalian origin having a molecular weight of about 148 kDa which binds to a GST-FKBP-Rapamycin complex.
 12. A recombinantly produced protein comprising a partial amino acid sequence of the protein of claim
 11. 13. cDNA of mammalian origin which encodes a 148 kDa protein which binds to a GST-FKBP-Rapamycin.
 14. DNA encoding for a protein of mammalian origin having a molecular weight of about 148 kDa which binds to a GST-FKBP-Rapamycin complex.
 15. Antisense RNA derived from a cDNA clone, the cDNA clone encoding for a protein of mammalian origin having a molecular weight of about 148 kDa which binds to a GST-FKBP-Rapamycin complex.
 16. Antisense DNA derived from a cDNA clone, the cDNA clone encoding for a protein of mammalian origin having a molecular weight of about 148 kDa which binds to a GST-FKBP-Rapamycin complex.
 17. A protein of mammalian origin having a molecular weight of about 208 kDa which binds to a GST-FKBP-Rapamycin complex.
 18. A protein of claim 17 which is of human origin.
 19. A recombinantly produced protein of mammalian origin having a molecular weight of about 208 kDa which binds to a GST-FKBP-Rapamycin complex.
 20. A recombinantly produced protein comprising a partial amino acid sequence of the protein of claim
 19. 21. cDNA of mammalian origin which encodes a 208 kDa protein which binds to a GST-FKBP-Rapamycin.
 22. DNA encoding for a protein of mammalian origin having a molecular weight of about 208 kDa which binds to a GST-FKBP-Rapamycin complex.
 23. Antisense RNA derived from a cDNA clone, the cDNA clone encoding for a protein of mammalian origin having a molecular weight of about 208 kDa which binds to a GST-FKBP-Rapamycin complex.
 24. Antisense DNA derived from a cDNA clone, the cDNA clone encoding for a protein of mammalian origin having a molecular weight of about 208 kDa which binds to a GST-FKBP-Rapamycin complex.
 25. A protein of mammalian origin having a molecular weight of about 210 kDa which binds to a GST-FKBP-Rapamycin complex.
 26. A protein of claim 25 which is of human origin.
 27. A protein of claim 25 which includes one or more of the following internal amino acid sequences: a) ILLNIEHR; B) LIRPYMEPILK; c) DXMEAQE; and d) QLDHPLPTVHPQVTYAYM(K)
 28. A recombinantly produced protein of mammalian origin having a molecular weight of about 210 kDa which binds to a GST-FKBP-Rapamycin complex.
 29. A recombinantly produced protein comprising a partial amino acid sequence of the protein of claim
 28. 30. A recombinantly produced protein of claim 25 which includes one or more of the following internal amino acid sequences: a) ILLNIEHR; B) LIRPYMEPILK; c) DXMEAQE; and d) QLDHPLPTVHPQVTYAYM(K)
 31. A cDNA of mammalian origin which encodes a 210 kDa protein which binds to a GST-FKBP-Rapamycin.
 32. A cDNA of claim 31 which encodes a 210 kDa protein which includes one or more of the following internal amino acid sequences: a) ILLNIEHR; B) LIRPYMEPILK; c) DXMEAQE; and d) QLDHPLPTVHPQVTYAYM(K)
 33. DNA encoding for a protein of mammalian origin having a molecular weight of about 210 kDa which binds to a GST-FKBP-Rapamycin complex.
 34. A DNA of claim 33 in which the protein of mammalian origin includes one or more of the following internal amino acid sequences: a) ILLNIEHR; B) LIRPYMEPILK; c) DXMEAQE; and d) QLDHPLPTVHPQVTYAYM(K)
 35. Antisense RNA derived from a cDNA clone, the cDNA clone encoding for a protein of mammalian origin having a molecular weight of about 210 kDa which binds to a GST-FKBP-Rapamycin complex.
 36. An antisense RNA derived from a cDNA clone of claim 35 the cDNA clone encoding for a protein of mammalian origin which includes one or more of the following internal amino acid sequences: a) ILLNIEHR; B) LIRPYMEPILK: c) DXMEAQE; and d) QLDHPLPTVHPQVTYAYM(K)
 37. Antisense DNA derived from a cDNA clone, the cDNA clone encoding for a protein of mammalian origin having a molecular weight of about 210 kDa which binds to a GST-FKBP-Rapamycin complex.
 38. An antisense DNA derived from a cDNA clone of claim 37 the cDNA clone encoding for a protein of mammalian origin which includes one or more of the following internal amino acid sequences: a) ILLNIEHR; B) LIRPYMEPILK; c) DXMEAQE; and d) QLDHPLPTVHPQVTYAYM(K)
 39. A process for isolating a protein having a molecular weight of about 125 kDa, about 148 kDa, about 208 kDa, or about 210 kDa which binds to a GST-FKBP-Rapamycin complex from mammalian cells, the process comprising: a) lysing the mammalian cells in the presence of a buffering agent, a low salt, a chelating agent, a protease inhibitor, and a reducing agent at a temperature which minimizes protein degradation, the Iysing creating unbroken cells, cell nuclei, and lysates, the lysates including cellular membrane fractions and cellular debris; b) preclearing unbroken cells and cell nuclei from the lysates at a temperature which minimizes protein degradation to create a precleared lysate; c) concentrating the cellular membrane fractions of the mammalian cells from the precleared lysate, the membrane fractions containing membrane proteins; d) solubilizing the membrane proteins in a buffer containing a detergent which solubilizes the proteins, without detrimentally denaturing the proteins, at a temperature which minimizes protein degradation, resulting in solubilized proteins and mammalian cellular debris; e) separating the solubilized proteins from the mammalian cellular debris; f) incubating a solution containing the solubilized proteins in a buffer, the buffer containing a buffering agent, a salt, a reducing agent, one or more protease inhibitor(s), divalent cations, with an affinity resin to absorb to the affinity resin those proteins which have an binding affinity to the affinity resin at a temperature which allows binding to the affinity resin and minimizes protein degradation; g) separating the affinity resin from the solution of step (f) at a temperature which minimizes protein degradation, yielding a solution (g) containing solubolized proteins which do not bind to the affinity resin in step (f); h) incubating the solution (g) with Rapamycin or a Rapamycin analog (IC50 in LAF<500 nM) complexed to a fusion protein of FKBP12+protein, the fusion protein enhancing the isolation of the desired about 125 kDa protein, about 148 kDa, about 208 kDa, or about 210 kDa yielding a mixture (h) containing the desired proteins having a molecular weight of about 125 kDa, about 148 kDa, about 208 kDa, or about 210 kDa bound to a fusion FKBP protein:Rapamycin complexes or fusion FKBP protein:Rapamycin analog complexes; i) incubating the mixture (h) containing the desired proteins having a molecular weight of about 125 kDa, about 148 kDa, about 208 kDa, or about 210 kDa bound to fusion FKBP protein:Rapamycin complexes or fusion FKBP protein:Rapamycin analog complexes with an affinity resin which binds to the fusion protein at a temperature and for a time which allows the binding to the affinity resin and minimizes protein degradation, bound to a fusion FKBP protein:Rapamycin complexes or fusion FKBP protein:Rapamycin analog complexes; j) rinsing the affinity resin (i) containing the bound complexes with a buffer which dissociates binding of proteins other than the desired about 125 kDa, about 148 kDa, about 208 kDa, or about 210 kDa proteins; k) eluting the about 125 kDa, about 148 kDa, about 208 kDa, or about 210 kDa protein: fusion FKBP protein:rapamycin complexes fusion or the 125 kDa protein:FKBP protein:rapamycin analog complexes from the affinity resin r) with a buffer; l) separating the proteins eluted in step (k) by size.
 40. A method for identifying in immunomodulatory or anti-tumor agent, comprising the steps of: a) combining a substance to be tested with a mammalian protein having a molecular weight of about 125 kDa, about 148 kDa, about 208 kDa, or about 210 kDa which binds to an FKBP-Rapamycin complex, the protein being bound to a solid support: b) maintaining the substance to be tested and the protein bound to the solid support of step (a) under conditions appropriate for binding of the substance to be tested with the protein, and c) determining whether binding of the substance to be tested occurred in step (b).
 41. A method of claim 40 in which the mammalian protein includes one or more of the following internal amino acid sequences: a) ILLNIEHR; B) LIRPYMEPILK; c) DXMEAQE; and d) QLDHPLPTVHPQVTYAYM(K)
 42. A method for identifying an immunomodulatory or anti-tumor agent, comprising the steps of: a) combining a substance to be tested with a mammalian protein having a molecular weight of about 125 kDa, about 148 kDa, about 208 kDa, or about 210 kDa which binds to an FKBP-Rapamycin complex, the protein being bound to a solid support: b) maintaining the substance to be tested and the protein bound to the solid support of step (a) under conditions appropriate for binding of the substance to be tested with the protein, and c) determining whether the presence of the substance to be tested modulated the activity of the mammalian protein having a molecular weight of about 125 kDa which binds to an FKBP-Rapamycin complex.
 43. A method of claim 42 in which the mammalian protein includes one or more of the following internal amino acid sequences: a) ILLNIEHR; B) LIRPYMEPILK; c) DXMEAQE; and d) QLDHPLPTVHPQVTYAYM(K)
 44. A method for detecting, in a biological sample, rapamycin, rapamycin analogs or rapamycin metabolites which, when complexed with a FKBP, bind to a mammalian protein having a molecular weight of about 125 kDa, about 148 kDa, about 208 kDa, or about 210 kDa which binds to a GST-FKBP-Rapamycin complex, the method comprising the steps of: a) combining the biological sample with a FKBP to form a first mixture containing, if rapamycin, rapamycin analogs or rapamycin metabolites are present in the biological sample, a rapamycin:FKBP complexes, rapamycin analog:FKBP complexes, or rapamycin metabolite:PKBP complexes; b) creating a second mixture by adding the first mixture to a protein having a molecular weight of about 125 kDa, about 148 kDa, about 208 kDa, or about 210 kDa which binds to a GST-FKBP-Rapamycin complex, the protein having a molecular weight of about 125 kDa being bound to a solid support; c) maintaining the second mixture of step (b) under conditions appropriate for binding the rapamycin:FKBP complexes, rapamycin analog:FKBP complexes, or rapamycin metabolite:FKBP complexes, if present, to the protein having a molecular weight of about 125 kDa, about, 148 kDa, about 208 kDa, or about 210 kDa which binds to a GST-FKBP-Rapamycin complex; and d) determining whether binding of the rapamycin:FKBP complexes, rapamycin analog:FKBP complexes, or rapamycin metabolite:FKBP complexes and the protein occurred in step (c).
 45. A method of claim 44 in which the protein includes one or more of the following internal amino acid sequences: a) ILLNIEHR; B) LIRPYMEPILK; c) DXMEAQE; and d) QLDHPLPTVHPQVTYAYM(K)
 46. A method for modulating the immune system of a mammal in need thereof, the method comprising administering to the mammal an immunomodulatory amount of antisense RNA derived from a cDNA clone which encodes for a protein having a molecular weight of about 125 kDa, about 148 kDa, about 208 kDa, or about 210 kDa which binds to an FKBP-Rapamycin complex.
 47. A method of claim 46 in which the protein includes one or more of the following internal amino acid sequences: a) ILLNIEHR; B) LIRPYMEPILK; c) DXMEAQE; and d) QLDHPLPTVHPQVTYAYM(K)
 48. A method for modulating the immune system of a mammal in need thereof, the method comprising administering to the mammal an immunomodulatory amount of antisense DNA derived from a cDNA clone which encodes for a protein having a molecular weight of about 125 kDa, about 148 kDa, about 208 kDa, or about 210 kDa which binds to an FKBP-Rapamycin complex.
 49. A method of claim 48 in which the protein includes one or more of the following internal amino acid sequences: a) ILLNIEHR; B) LIRPYMEPILK; c) DXMEAQE; and d) QLDHPLPTVHPQVTYAYM(K)
 50. A protein of mammalian origin which includes one or more of the following internal amino acid sequences: a) ILLNIEHR; B) LIRPYMEPILK; c) DXMEAQE; and d) QLDHPLPTVHPQVTYAYM(K)
 51. A recombinantly produced protein which includes one or more of the following internal amino acid sequences: a) ILLNIEHR; B) LIRPYMEPILK; c) DXMEAQE; and d) QLDHPLPTVHPQVTYAYM(K)
 52. A cDNA which encodes a protein which includes one or more of the following internal amino acid sequences: a) ILLNIEHR; B) LIRPYMEPILK; c) DXMEAQE; and d) QLDHPLPTVHPQVTYAYM(K)
 53. A DNA encoding for a protein of mammalian origin which includes one or more of the following internal amino acid sequences: a) ILLNIEHR; B) LIRPYMEPILK; c) DXMEAQE; and d) QLDHPLPTVHPQVTYAYM(K)
 54. An antisense RNA derived from a cDNA clone encoding for a protein of mammalian origin which includes one or more of the following internal amino acid sequences: a) ILLNIEHR; B) LIRPYMEPILK; c) DXMEAQE; and d) QLDHPLPTVHPQVTYAYM(K)
 55. An antisense DNA derived from a cDNA clone encoding for a protein of mammalian origin which includes one or more of the following internal amino acid sequences: a) ILLNIEHR; B) LIRPYMEPILK; c) DXMEAQE; and d) QLDHPLPTVHPQVTYAYM(K) 